- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 1.60 Å
- Oligo State
- homo-dimer
- Ligands
- 2 x ADE: ADENINE(Non-covalent)
- 2 x TRS: 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL(Non-functional Binders)
TRS.2: 10 residues within 4Å:- Chain A: A.9, M.10, E.13, V.78, E.173, M.174, E.175, R.194, F.208
- Ligands: ADE.1
5 PLIP interactions:5 interactions with chain A- Hydrogen bonds: A:E.13, A:V.78, A:M.174, A:R.194, A:R.194
TRS.8: 10 residues within 4Å:- Chain B: A.9, M.10, E.13, V.78, E.173, M.174, E.175, R.194, F.208
- Ligands: ADE.7
5 PLIP interactions:5 interactions with chain B- Hydrogen bonds: B:E.13, B:V.78, B:M.174, B:R.194, B:R.194
- 8 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)
EDO.3: 4 residues within 4Å:- Chain A: S.126, L.127, L.130, L.230
1 PLIP interactions:1 interactions with chain A- Hydrogen bonds: A:S.126
EDO.4: 5 residues within 4Å:- Chain A: R.11, G.32, N.33, V.34, Y.49
6 PLIP interactions:5 interactions with chain A, 1 interactions with chain B- Hydrogen bonds: A:R.11, A:N.33, A:V.34, A:Y.49
- Water bridges: A:Y.49, B:E.116
EDO.5: 2 residues within 4Å:- Chain A: I.28, F.68
No protein-ligand interaction detected (PLIP)EDO.6: 4 residues within 4Å:- Chain A: K.133, I.134, E.137, E.229
No protein-ligand interaction detected (PLIP)EDO.9: 4 residues within 4Å:- Chain B: S.126, L.127, L.130, L.230
1 PLIP interactions:1 interactions with chain B- Hydrogen bonds: B:S.126
EDO.10: 5 residues within 4Å:- Chain B: R.11, G.32, N.33, V.34, Y.49
5 PLIP interactions:5 interactions with chain B- Hydrogen bonds: B:R.11, B:N.33, B:V.34, B:Y.49
- Water bridges: B:Y.49
EDO.11: 2 residues within 4Å:- Chain B: I.28, F.68
No protein-ligand interaction detected (PLIP)EDO.12: 4 residues within 4Å:- Chain B: K.133, I.134, E.137, E.229
No protein-ligand interaction detected (PLIP)- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Ronning, D.R. et al., Enzyme-ligand interactions that drive active site rearrangements in the Helicobacter pylori 5'-methylthioadenosine/S-adenosylhomocysteine nucleosidase. Protein Sci. (2010)
- Release Date
- 2010-11-24
- Peptides
- MTA/SAH nucleosidase: AB
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
BB
B
- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 1.60 Å
- Oligo State
- homo-dimer
- Ligands
- 2 x ADE: ADENINE(Non-covalent)
- 2 x TRS: 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL(Non-functional Binders)
- 8 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Ronning, D.R. et al., Enzyme-ligand interactions that drive active site rearrangements in the Helicobacter pylori 5'-methylthioadenosine/S-adenosylhomocysteine nucleosidase. Protein Sci. (2010)
- Release Date
- 2010-11-24
- Peptides
- MTA/SAH nucleosidase: AB
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
BB
B