- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 2.19 Å
- Oligo State
- homo-dimer
- Ligands
- 2 x HNK: 5-[(2R)-1-methylpyrrolidin-2-yl]pyridin-2-ol(Non-covalent)
- 2 x FB0: (2R,3S,4S)-5-({[(acetylcarbamoyl)amino]methyl}[(3S,4R)-6-amino-3,4-dimethylhexyl]amino)-2,3,4-trihydroxypentyl [(2R,3S,4R,5R)-5-(6-amino-9H-purin-9-yl)-3,4-dihydroxytetrahydrofuran-2-yl]methyl dihydrogen diphosphate (non-preferred name)(Non-covalent)
FB0.2: 35 residues within 4Å:- Chain A: V.7, G.8, G.9, G.10, F.11, S.12, L.30, E.31, G.32, G.37, G.38, R.39, G.56, G.57, A.58, Y.59, T.224, V.225, V.226, A.254, T.255, P.256, K.287, W.361, L.366, F.367, P.370, W.371, G.397, S.398, G.406, Y.407, I.408, A.411
- Ligands: HNK.1
38 PLIP interactions:38 interactions with chain A- Hydrophobic interactions: A:R.39, A:R.39, A:K.287, A:K.287, A:W.361, A:P.370, A:W.371, A:W.371
- Hydrogen bonds: A:G.9, A:G.10, A:F.11, A:S.12, A:G.32, A:R.39, A:A.58, A:Y.59, A:Y.59, A:V.226, A:V.226, A:S.398, A:S.398, A:G.406, A:I.408
- Water bridges: A:G.13, A:E.31, A:E.31, A:G.38, A:R.39, A:R.39, A:A.40, A:A.40, A:T.259, A:T.259, A:T.259, A:D.399, A:E.409
- Salt bridges: A:R.39, A:R.39
FB0.5: 35 residues within 4Å:- Chain B: V.7, G.8, G.9, G.10, F.11, S.12, L.30, E.31, G.32, G.37, G.38, R.39, G.56, G.57, A.58, Y.59, T.224, V.225, V.226, A.254, T.255, P.256, K.287, W.361, L.366, F.367, P.370, W.371, G.397, S.398, G.406, Y.407, I.408, A.411
- Ligands: HNK.4
38 PLIP interactions:38 interactions with chain B- Hydrophobic interactions: B:R.39, B:R.39, B:K.287, B:K.287, B:W.361, B:P.370, B:W.371, B:W.371
- Hydrogen bonds: B:G.9, B:G.10, B:F.11, B:S.12, B:G.32, B:R.39, B:A.58, B:Y.59, B:Y.59, B:V.226, B:V.226, B:T.259, B:S.398, B:S.398, B:G.406, B:I.408
- Water bridges: B:G.13, B:E.31, B:E.31, B:G.38, B:R.39, B:R.39, B:A.40, B:A.40, B:T.255, B:T.255, B:D.399, B:E.409
- Salt bridges: B:R.39, B:R.39
- 2 x GP7: (1R)-2-{[(S)-(2-aminoethoxy)(hydroxy)phosphoryl]oxy}-1-[(pentadecanoyloxy)methyl]ethyl (12E)-hexadeca-9,12-dienoate(Non-covalent)
GP7.3: 21 residues within 4Å:- Chain A: Q.99, A.100, F.101, T.115, F.159, L.160, W.163, A.164, M.180, I.191, L.192, V.194, V.195
- Chain B: V.97, F.101, I.103, P.104, G.105, A.108, V.111, E.112
16 PLIP interactions:10 interactions with chain A, 6 interactions with chain B- Hydrophobic interactions: A:F.101, A:F.101, A:F.159, A:L.160, A:W.163, A:A.164, A:I.191, A:L.192, A:V.194, A:V.195, B:F.101, B:A.108, B:V.111, B:E.112
- Hydrogen bonds: B:G.105, B:S.106
GP7.6: 21 residues within 4Å:- Chain A: V.97, F.101, I.103, P.104, G.105, A.108, V.111, E.112
- Chain B: Q.99, A.100, F.101, T.115, F.159, L.160, W.163, A.164, M.180, I.191, L.192, V.194, V.195
16 PLIP interactions:10 interactions with chain B, 6 interactions with chain A- Hydrophobic interactions: B:F.101, B:F.101, B:F.159, B:L.160, B:W.163, B:A.164, B:I.191, B:L.192, B:V.194, B:V.195, A:F.101, A:A.108, A:V.111, A:E.112
- Hydrogen bonds: A:G.105, A:S.106
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Kachalova, G.S. et al., Crystal structure analysis of free and substrate-bound 6-hydroxy-L-nicotine oxidase from Arthrobacter nicotinovorans. J.Mol.Biol. (2010)
- Release Date
- 2011-03-23
- Peptides
- 6-hydroxy-L-nicotine oxidase: AB
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
XB
X
- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 2.19 Å
- Oligo State
- homo-dimer
- Ligands
- 2 x HNK: 5-[(2R)-1-methylpyrrolidin-2-yl]pyridin-2-ol(Non-covalent)
- 2 x FB0: (2R,3S,4S)-5-({[(acetylcarbamoyl)amino]methyl}[(3S,4R)-6-amino-3,4-dimethylhexyl]amino)-2,3,4-trihydroxypentyl [(2R,3S,4R,5R)-5-(6-amino-9H-purin-9-yl)-3,4-dihydroxytetrahydrofuran-2-yl]methyl dihydrogen diphosphate (non-preferred name)(Non-covalent)
- 2 x GP7: (1R)-2-{[(S)-(2-aminoethoxy)(hydroxy)phosphoryl]oxy}-1-[(pentadecanoyloxy)methyl]ethyl (12E)-hexadeca-9,12-dienoate(Non-covalent)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Kachalova, G.S. et al., Crystal structure analysis of free and substrate-bound 6-hydroxy-L-nicotine oxidase from Arthrobacter nicotinovorans. J.Mol.Biol. (2010)
- Release Date
- 2011-03-23
- Peptides
- 6-hydroxy-L-nicotine oxidase: AB
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
XB
X