SMTL ID : 3nqh.2 (1 other biounit)

Crystal structure of a glycosyl hydrolase (BT_2959) from BACTEROIDES THETAIOTAOMICRON VPI-5482 at 2.11 A resolution

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.11 Å

Oligo State

homo-dimer

Ligands

4 x GOL: GLYCEROL(Non-functional Binders)

GOL.1: 6 residues within 4Å: Chain A: E.86, R.87, Y.110, D.144, E.188, Q.243 6 PLIP interactions: 6 interactions with chain A Hydrogen bonds: A:E.86, A:R.87, A:Y.110, A:E.188, A:Q.243 Water bridges: A:D.144 GOL.2: 3 residues within 4Å: Chain A: Q.74, S.75 Chain B: K.339 4 PLIP interactions: 2 interactions with chain A, 2 interactions with chain B Hydrogen bonds: A:S.75, B:K.339, B:K.339 Water bridges: A:Q.74 GOL.4: 6 residues within 4Å: Chain B: E.86, R.87, Y.110, D.144, E.188, Q.243 5 PLIP interactions: 5 interactions with chain B Hydrogen bonds: B:E.86, B:R.87, B:Y.110, B:E.188, B:Q.243 GOL.5: 3 residues within 4Å: Chain A: K.339 Chain B: Q.74, S.75 4 PLIP interactions: 2 interactions with chain A, 2 interactions with chain B Hydrogen bonds: A:K.339, A:K.339, B:S.75 Water bridges: B:Q.74

2 x ACT: ACETATE ION(Non-functional Binders)

ACT.3: 3 residues within 4Å: Chain A: Y.110, D.420, K.421 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:K.421 ACT.6: 3 residues within 4Å: Chain B: Y.110, D.420, K.421 1 PLIP interactions: 1 interactions with chain B Hydrogen bonds: B:K.421

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Joint Center for Structural Genomics (JCSG), Crystal structure of a glycosyl hydrolase (BT_2959) from BACTEROIDES THETAIOTAOMICRON VPI-5482 at 2.11 A resolution. To be published

Release Date

2010-07-28

Peptides

Glycosyl hydrolase: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
A

Glycosyl hydrolase

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