SMTL ID : 3nrd.4 (3 other biounits)

Crystal structure of a histidine triad (HIT) protein (SMc02904) from SINORHIZOBIUM MELILOTI 1021 at 2.06 A resolution

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.06 Å

Oligo State

homo-octamer

Ligands

8 x GOL: GLYCEROL(Non-functional Binders)

GOL.1: 4 residues within 4Å: Chain A: P.35, T.75, W.119, F.127 1 PLIP interactions: 1 interactions with chain A Water bridges: A:T.75 GOL.2: 9 residues within 4Å: Chain A: R.10, L.11, D.14, M.29, I.88, V.89, H.93, H.95 Ligands: SO4.4 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:D.14, A:D.14, A:H.93 GOL.6: 5 residues within 4Å: Chain A: N.65, I.82 Chain B: V.49, T.61, T.64 5 PLIP interactions: 3 interactions with chain B, 2 interactions with chain A Hydrogen bonds: B:T.64, B:T.64, A:N.65, A:N.65 Water bridges: B:T.61 GOL.7: 7 residues within 4Å: Chain B: R.10, L.11, D.14, I.88, V.89, H.93 Ligands: SO4.11 2 PLIP interactions: 2 interactions with chain B Hydrogen bonds: B:D.14, B:H.93 GOL.18: 4 residues within 4Å: Chain E: P.35, T.75, W.119, F.127 1 PLIP interactions: 1 interactions with chain E Water bridges: E:T.75 GOL.19: 9 residues within 4Å: Chain E: R.10, L.11, D.14, M.29, I.88, V.89, H.93, H.95 Ligands: SO4.21 2 PLIP interactions: 2 interactions with chain E Hydrogen bonds: E:D.14, E:H.93 GOL.23: 5 residues within 4Å: Chain E: N.65, I.82 Chain F: V.49, T.61, T.64 3 PLIP interactions: 1 interactions with chain F, 2 interactions with chain E Hydrogen bonds: F:T.64, E:N.65, E:N.65 GOL.24: 7 residues within 4Å: Chain F: R.10, L.11, D.14, I.88, V.89, H.93 Ligands: SO4.28 3 PLIP interactions: 3 interactions with chain F Hydrogen bonds: F:D.14, F:D.14, F:H.93

26 x SO4: SULFATE ION(Non-functional Binders)

SO4.3: 3 residues within 4Å: Chain A: G.1, R.43, A.44 Ligand excluded by PLIP SO4.4: 8 residues within 4Å: Chain A: L.85, G.86, N.87, I.88, V.89, H.93, H.95 Ligands: GOL.2 Ligand excluded by PLIP SO4.5: 8 residues within 4Å: Chain A: M.2, T.20, L.21, G.22, Q.42 Chain E: T.20, L.21, M.132 Ligand excluded by PLIP SO4.8: 8 residues within 4Å: Chain A: P.54, Q.57, A.58 Chain B: A.58, T.61, F.62 Chain F: P.54, L.55 Ligand excluded by PLIP SO4.9: 5 residues within 4Å: Chain B: T.3, Q.42, R.43 Chain C: T.20, L.21 Ligand excluded by PLIP SO4.10: 4 residues within 4Å: Chain B: M.2, T.3, R.43, A.44 Ligand excluded by PLIP SO4.11: 8 residues within 4Å: Chain B: L.85, G.86, N.87, I.88, V.89, H.93, H.95 Ligands: GOL.7 Ligand excluded by PLIP SO4.12: 7 residues within 4Å: Chain C: L.85, G.86, N.87, I.88, V.89, H.93, H.95 Ligand excluded by PLIP SO4.13: 4 residues within 4Å: Chain C: M.2, T.3, R.43, A.44 Ligand excluded by PLIP SO4.14: 2 residues within 4Å: Chain C: K.47, R.90 Ligand excluded by PLIP SO4.15: 8 residues within 4Å: Chain C: A.58, T.61, F.62 Chain D: P.54, Q.57, A.58 Chain G: P.54, L.55 Ligand excluded by PLIP SO4.16: 3 residues within 4Å: Chain D: G.1, R.43, A.44 Ligand excluded by PLIP SO4.17: 7 residues within 4Å: Chain D: L.85, G.86, N.87, I.88, V.89, H.93, H.95 Ligand excluded by PLIP SO4.20: 3 residues within 4Å: Chain E: G.1, R.43, A.44 Ligand excluded by PLIP SO4.21: 8 residues within 4Å: Chain E: L.85, G.86, N.87, I.88, V.89, H.93, H.95 Ligands: GOL.19 Ligand excluded by PLIP SO4.22: 8 residues within 4Å: Chain A: T.20, L.21, M.132 Chain E: M.2, T.20, L.21, G.22, Q.42 Ligand excluded by PLIP SO4.25: 8 residues within 4Å: Chain B: P.54, L.55 Chain E: P.54, Q.57, A.58 Chain F: A.58, T.61, F.62 Ligand excluded by PLIP SO4.26: 5 residues within 4Å: Chain F: T.3, Q.42, R.43 Chain G: T.20, L.21 Ligand excluded by PLIP SO4.27: 4 residues within 4Å: Chain F: M.2, T.3, R.43, A.44 Ligand excluded by PLIP SO4.28: 8 residues within 4Å: Chain F: L.85, G.86, N.87, I.88, V.89, H.93, H.95 Ligands: GOL.24 Ligand excluded by PLIP SO4.29: 7 residues within 4Å: Chain G: L.85, G.86, N.87, I.88, V.89, H.93, H.95 Ligand excluded by PLIP SO4.30: 4 residues within 4Å: Chain G: M.2, T.3, R.43, A.44 Ligand excluded by PLIP SO4.31: 2 residues within 4Å: Chain G: K.47, R.90 Ligand excluded by PLIP SO4.32: 8 residues within 4Å: Chain C: P.54, L.55 Chain G: A.58, T.61, F.62 Chain H: P.54, Q.57, A.58 Ligand excluded by PLIP SO4.33: 3 residues within 4Å: Chain H: G.1, R.43, A.44 Ligand excluded by PLIP SO4.34: 7 residues within 4Å: Chain H: L.85, G.86, N.87, I.88, V.89, H.93, H.95 Ligand excluded by PLIP

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Joint Center for Structural Genomics (JCSG), Crystal structure of a histidine triad (HIT) protein (SMc02904) from SINORHIZOBIUM MELILOTI 1021 at 2.06 A resolution. To be published

Release Date

2010-07-28

Peptides

histidine triad (HIT) protein: ABCDEFGH

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
C

D
D

E
A

F
B

G
C

H
D

histidine triad (HIT) protein

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