SMTL ID : 3nrf.1

Crystal structure of an apag protein (PA1934) from pseudomonas aeruginosa pao1 at 1.50 A resolution

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.50 Å

Oligo State

homo-tetramer

Ligands

6 x MRD: (4R)-2-METHYLPENTANE-2,4-DIOL(Non-functional Binders)

MRD.1: 6 residues within 4Å: Chain A: F.10, A.11, R.12, K.32, R.34, E.81 2 PLIP interactions: 2 interactions with chain A Hydrophobic interactions: A:F.10, A:K.32 MRD.2: 5 residues within 4Å: Chain B: F.10, R.12, K.32, R.34, E.81 3 PLIP interactions: 3 interactions with chain B Hydrophobic interactions: B:R.12, B:K.32 Hydrogen bonds: B:K.32 MRD.3: 5 residues within 4Å: Chain B: T.64, V.65, D.66, D.83, I.85 2 PLIP interactions: 2 interactions with chain B Hydrophobic interactions: B:I.85 Hydrogen bonds: B:D.83 MRD.5: 6 residues within 4Å: Chain C: F.10, A.11, R.12, K.32, R.34, E.81 2 PLIP interactions: 2 interactions with chain C Hydrophobic interactions: C:F.10, C:K.32 MRD.6: 5 residues within 4Å: Chain D: F.10, R.12, K.32, R.34, E.81 3 PLIP interactions: 3 interactions with chain D Hydrophobic interactions: D:R.12, D:K.32 Hydrogen bonds: D:K.32 MRD.7: 5 residues within 4Å: Chain D: T.64, V.65, D.66, D.83, I.85 3 PLIP interactions: 3 interactions with chain D Hydrophobic interactions: D:I.85 Hydrogen bonds: D:T.64, D:D.83

2 x CAC: CACODYLATE ION(Non-covalent)

CAC.4: 5 residues within 4Å: Chain B: Q.53, S.59, R.100, S.102, R.104 3 PLIP interactions: 3 interactions with chain B Hydrogen bonds: B:Q.53, B:S.59, B:R.100 CAC.8: 5 residues within 4Å: Chain D: Q.53, S.59, R.100, S.102, R.104 3 PLIP interactions: 3 interactions with chain D Hydrogen bonds: D:Q.53, D:S.59, D:R.100

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Joint Center for Structural Genomics (JCSG), Crystal structure of an ApaG protein (PA1934) from PSEUDOMONAS AERUGINOSA at 1.50 A resolution. To be published

Release Date

2010-07-28

Peptides

ApaG protein: ABCD

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
A

D
B

ApaG protein

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