- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 2.90 Å
- Oligo State
- homo-hexamer
- Ligands
- 3 x NAD: NICOTINAMIDE-ADENINE-DINUCLEOTIDE(Non-covalent)
- 6 x ISE: (2R,3S,4s,5R,6S)-2,3,4,5,6-pentahydroxycyclohexanone(Non-covalent)
ISE.2: 7 residues within 4Å:- Chain A: K.97, R.127, H.155, N.157, D.172, H.176, Y.235
5 PLIP interactions:5 interactions with chain A- Hydrogen bonds: A:K.97, A:K.97, A:R.127, A:N.157, A:H.176
ISE.4: 9 residues within 4Å:- Chain B: K.97, R.127, H.155, N.157, D.172, H.176, Y.235, W.272
- Ligands: NAI.3
5 PLIP interactions:5 interactions with chain B- Hydrogen bonds: B:K.97, B:K.97, B:R.127, B:N.157, B:H.176
ISE.6: 7 residues within 4Å:- Chain C: K.97, R.127, H.155, N.157, D.172, H.176, Y.235
5 PLIP interactions:5 interactions with chain C- Hydrogen bonds: C:K.97, C:K.97, C:R.127, C:N.157, C:H.176
ISE.8: 9 residues within 4Å:- Chain D: K.97, R.127, H.155, N.157, D.172, H.176, Y.235, W.272
- Ligands: NAI.7
6 PLIP interactions:6 interactions with chain D- Hydrogen bonds: D:K.97, D:K.97, D:R.127, D:N.157, D:H.176, D:Y.235
ISE.10: 7 residues within 4Å:- Chain E: K.97, R.127, H.155, N.157, D.172, H.176, Y.235
5 PLIP interactions:5 interactions with chain E- Hydrogen bonds: E:K.97, E:K.97, E:R.127, E:N.157, E:H.176
ISE.12: 9 residues within 4Å:- Chain F: K.97, R.127, H.155, N.157, D.172, H.176, Y.235, W.272
- Ligands: NAI.11
6 PLIP interactions:6 interactions with chain F- Hydrogen bonds: F:K.97, F:K.97, F:R.127, F:N.157, F:H.176, F:Y.235
- 3 x NAI: 1,4-DIHYDRONICOTINAMIDE ADENINE DINUCLEOTIDE(Non-covalent)
NAI.3: 17 residues within 4Å:- Chain B: I.8, G.9, G.11, A.12, I.13, T.34, D.35, V.36, D.58, S.74, W.75, A.78, H.79, S.82, K.97, W.272
- Ligands: ISE.4
12 PLIP interactions:12 interactions with chain B- Hydrophobic interactions: B:W.272
- Hydrogen bonds: B:A.12, B:I.13, B:D.35, B:V.36, B:D.58, B:S.74, B:W.75, B:H.79, B:S.82, B:K.97, B:W.272
NAI.7: 17 residues within 4Å:- Chain D: I.8, G.9, G.11, A.12, I.13, T.34, D.35, V.36, D.58, S.74, W.75, A.78, H.79, S.82, K.97, W.272
- Ligands: ISE.8
12 PLIP interactions:12 interactions with chain D- Hydrophobic interactions: D:W.272
- Hydrogen bonds: D:A.12, D:I.13, D:D.35, D:V.36, D:D.58, D:S.74, D:W.75, D:H.79, D:S.82, D:K.97, D:W.272
NAI.11: 17 residues within 4Å:- Chain F: I.8, G.9, G.11, A.12, I.13, T.34, D.35, V.36, D.58, S.74, W.75, A.78, H.79, S.82, K.97, W.272
- Ligands: ISE.12
12 PLIP interactions:12 interactions with chain F- Hydrophobic interactions: F:W.272
- Hydrogen bonds: F:A.12, F:I.13, F:D.35, F:V.36, F:D.58, F:S.74, F:W.75, F:H.79, F:S.82, F:K.97, F:W.272
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- van Straaten, K.E. et al., Structural investigation of myo-inositol dehydrogenase from Bacillus subtilis: implications for catalytic mechanism and inositol dehydrogenase subfamily classification. Biochem.J. (2010)
- Release Date
- 2010-09-15
- Peptides
- Inositol 2-dehydrogenase/D-chiro-inositol 3-dehydrogenase: ABCDEF
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
BC
AD
BE
AF
B
- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 2.90 Å
- Oligo State
- homo-hexamer
- Ligands
- 3 x NAD: NICOTINAMIDE-ADENINE-DINUCLEOTIDE(Non-covalent)
- 6 x ISE: (2R,3S,4s,5R,6S)-2,3,4,5,6-pentahydroxycyclohexanone(Non-covalent)
- 3 x NAI: 1,4-DIHYDRONICOTINAMIDE ADENINE DINUCLEOTIDE(Non-covalent)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- van Straaten, K.E. et al., Structural investigation of myo-inositol dehydrogenase from Bacillus subtilis: implications for catalytic mechanism and inositol dehydrogenase subfamily classification. Biochem.J. (2010)
- Release Date
- 2010-09-15
- Peptides
- Inositol 2-dehydrogenase/D-chiro-inositol 3-dehydrogenase: ABCDEF
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
BC
AD
BE
AF
B