- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 2.20 Å
- Oligo State
- homo-dimer
- Ligands
- 8 x GOL: GLYCEROL(Non-functional Binders)
- 12 x SO4: SULFATE ION(Non-functional Binders)
SO4.5: 4 residues within 4Å:- Chain A: V.279, T.280, W.281, E.282
2 PLIP interactions:2 interactions with chain A- Hydrogen bonds: A:W.281, A:E.282
SO4.6: 4 residues within 4Å:- Chain A: R.70, K.133
- Chain B: P.8, R.9
3 PLIP interactions:2 interactions with chain A, 1 interactions with chain B- Salt bridges: A:R.70, A:K.133
- Hydrogen bonds: B:R.9
SO4.7: 5 residues within 4Å:- Chain A: K.10, R.65, T.82, F.83, Q.84
5 PLIP interactions:5 interactions with chain A- Hydrogen bonds: A:T.82, A:T.82, A:Q.84
- Salt bridges: A:K.10, A:R.65
SO4.8: 3 residues within 4Å:- Chain A: R.40
- Chain B: H.285
- Ligands: GOL.1
3 PLIP interactions:2 interactions with chain A, 1 interactions with chain B- Water bridges: A:R.40
- Salt bridges: A:R.40, B:H.285
SO4.9: 5 residues within 4Å:- Chain A: Y.80, S.94, Y.95, Q.154
- Ligands: GOL.1
3 PLIP interactions:3 interactions with chain A- Hydrogen bonds: A:Y.95, A:Y.95, A:Q.154
SO4.10: 4 residues within 4Å:- Chain A: G.25, S.26, F.27, S.28
6 PLIP interactions:6 interactions with chain A- Hydrogen bonds: A:S.26, A:F.27, A:S.28, A:S.28, A:S.28
- Water bridges: A:K.45
SO4.16: 4 residues within 4Å:- Chain B: V.279, T.280, W.281, E.282
2 PLIP interactions:2 interactions with chain B- Hydrogen bonds: B:W.281, B:E.282
SO4.17: 4 residues within 4Å:- Chain A: P.8, R.9
- Chain B: R.70, K.133
3 PLIP interactions:2 interactions with chain B, 1 interactions with chain A- Salt bridges: B:R.70, B:K.133
- Hydrogen bonds: A:R.9
SO4.18: 5 residues within 4Å:- Chain B: K.10, R.65, T.82, F.83, Q.84
5 PLIP interactions:5 interactions with chain B- Hydrogen bonds: B:T.82, B:T.82, B:Q.84
- Salt bridges: B:K.10, B:R.65
SO4.19: 3 residues within 4Å:- Chain A: H.285
- Chain B: R.40
- Ligands: GOL.12
3 PLIP interactions:1 interactions with chain A, 2 interactions with chain B- Salt bridges: A:H.285, B:R.40
- Water bridges: B:R.40
SO4.20: 5 residues within 4Å:- Chain B: Y.80, S.94, Y.95, Q.154
- Ligands: GOL.12
4 PLIP interactions:4 interactions with chain B- Hydrogen bonds: B:Y.80, B:Y.95, B:Y.95, B:Q.154
SO4.21: 4 residues within 4Å:- Chain B: G.25, S.26, F.27, S.28
6 PLIP interactions:6 interactions with chain B- Hydrogen bonds: B:S.26, B:F.27, B:S.28, B:S.28, B:S.28
- Water bridges: B:K.45
- 2 x JMZ: 6-(2-AMINOPYRIMIDIN-4-YL)-1H-INDAZOL-3-AMINE(Non-covalent)
JMZ.11: 11 residues within 4Å:- Chain A: V.30, A.43, K.45, E.64, L.93, S.94, Y.95, A.96, L.146, T.156, D.157
9 PLIP interactions:9 interactions with chain A- Hydrophobic interactions: A:V.30, A:L.146
- Hydrogen bonds: A:K.45, A:A.96, A:A.96, A:D.157
- Water bridges: A:S.28
- Salt bridges: A:E.64, A:D.157
JMZ.22: 11 residues within 4Å:- Chain B: V.30, A.43, K.45, E.64, L.93, S.94, Y.95, A.96, L.146, T.156, D.157
10 PLIP interactions:10 interactions with chain B- Hydrophobic interactions: B:V.30, B:L.146
- Hydrogen bonds: B:K.45, B:A.96, B:A.96, B:T.156, B:D.157
- Water bridges: B:S.28
- Salt bridges: B:E.64, B:D.157
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Medina, J.R. et al., Aminoindazole PDK1 Inhibitors: A Case Study in Fragment-Based Drug Discovery. TO BE PUBLISHED
- Release Date
- 2011-06-22
- Peptides
- PkB-like: AB
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
A
- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 2.20 Å
- Oligo State
- homo-dimer
- Ligands
- 8 x GOL: GLYCEROL(Non-functional Binders)
- 12 x SO4: SULFATE ION(Non-functional Binders)
- 2 x JMZ: 6-(2-AMINOPYRIMIDIN-4-YL)-1H-INDAZOL-3-AMINE(Non-covalent)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Medina, J.R. et al., Aminoindazole PDK1 Inhibitors: A Case Study in Fragment-Based Drug Discovery. TO BE PUBLISHED
- Release Date
- 2011-06-22
- Peptides
- PkB-like: AB
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
A