- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 2.75 Å
- Oligo State
- homo-dimer
- Ligands
- 8 x GOL: GLYCEROL(Non-functional Binders)
- 2 x JNZ: 1H-indazol-3-amine(Non-covalent)
JNZ.5: 8 residues within 4Å:- Chain A: L.16, V.24, A.37, L.87, S.88, Y.89, A.90, L.140
5 PLIP interactions:5 interactions with chain A- Hydrophobic interactions: A:V.24, A:L.87, A:L.140
- Hydrogen bonds: A:A.90, A:A.90
JNZ.13: 8 residues within 4Å:- Chain B: L.16, V.24, A.37, L.87, S.88, Y.89, A.90, L.140
5 PLIP interactions:5 interactions with chain B- Hydrophobic interactions: B:V.24, B:L.87, B:L.140
- Hydrogen bonds: B:A.90, B:A.90
- 6 x SO4: SULFATE ION(Non-functional Binders)
SO4.6: 5 residues within 4Å:- Chain A: K.4, R.59, T.76, F.77, Q.78
3 PLIP interactions:3 interactions with chain A- Hydrogen bonds: A:Q.78
- Salt bridges: A:K.4, A:R.59
SO4.7: 4 residues within 4Å:- Chain A: R.34
- Chain B: P.68, H.279
- Ligands: GOL.1
2 PLIP interactions:1 interactions with chain A, 1 interactions with chain B- Salt bridges: A:R.34, B:H.279
SO4.8: 4 residues within 4Å:- Chain A: G.19, S.20, F.21, S.22
4 PLIP interactions:4 interactions with chain A- Hydrogen bonds: A:S.20, A:F.21, A:S.22, A:S.22
SO4.14: 5 residues within 4Å:- Chain B: K.4, R.59, T.76, F.77, Q.78
4 PLIP interactions:4 interactions with chain B- Hydrogen bonds: B:T.76, B:Q.78
- Salt bridges: B:K.4, B:R.59
SO4.15: 4 residues within 4Å:- Chain A: P.68, H.279
- Chain B: R.34
- Ligands: GOL.9
2 PLIP interactions:1 interactions with chain B, 1 interactions with chain A- Salt bridges: B:R.34, A:H.279
SO4.16: 4 residues within 4Å:- Chain B: G.19, S.20, F.21, S.22
4 PLIP interactions:4 interactions with chain B- Hydrogen bonds: B:S.20, B:F.21, B:S.22, B:S.22
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Medina, J.R. et al., Aminoindazole PDK1 Inhibitors: A Case Study in Fragment-Based Drug Discovery. ACS Med Chem Lett (2010)
- Release Date
- 2011-05-25
- Peptides
- phosphoinositide-dependent kinase-1: AB
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
A
- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 2.75 Å
- Oligo State
- homo-dimer
- Ligands
- 8 x GOL: GLYCEROL(Non-functional Binders)
- 2 x JNZ: 1H-indazol-3-amine(Non-covalent)
- 6 x SO4: SULFATE ION(Non-functional Binders)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Medina, J.R. et al., Aminoindazole PDK1 Inhibitors: A Case Study in Fragment-Based Drug Discovery. ACS Med Chem Lett (2010)
- Release Date
- 2011-05-25
- Peptides
- phosphoinositide-dependent kinase-1: AB
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
A