SMTL ID : 3nv5.1

Crystal Structure of Cytochrome P450 CYP101D2

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.41 Å

Oligo State

monomer

Ligands

1 x HEM: PROTOPORPHYRIN IX CONTAINING FE(Non-covalent)

HEM.1: 26 residues within 4Å: Chain A: Y.111, T.137, H.144, R.148, L.151, L.286, L.287, G.290, G.291, T.294, V.295, F.298, V.337, E.339, R.341, T.391, F.392, G.393, P.396, H.397, C.399, A.400, G.401, A.405, E.408 Ligands: PEG.2 17 PLIP interactions: 16 interactions with chain A, 1 Ligand-Water interactions Hydrophobic interactions: A:T.137, A:L.151, A:L.286, A:T.294, A:F.298, A:V.337, A:T.391, A:A.400 Hydrogen bonds: A:Y.111, A:Y.111 Salt bridges: A:H.144, A:R.148, A:R.341, A:H.397 pi-Stacking: A:F.392 Metal complexes: A:C.399, H2O.6

2 x PEG: DI(HYDROXYETHYL)ETHER(Non-functional Binders)

PEG.2: 6 residues within 4Å: Chain A: L.286, G.290, T.294, V.337, E.339 Ligands: HEM.1 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:E.339 PEG.3: 2 residues within 4Å: Chain A: V.212, Y.245 No protein-ligand interaction detected (PLIP)

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Yang, W. et al., The structure of CYP101D2 unveils a potential path for substrate entry into the active site. Biochem.J. (2011)

Release Date

2010-11-03

Peptides

Cytochrome P450: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Cytochrome P450

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