SMTL ID : 3nv6.1

Crystal Structure of Camphor-Bound CYP101D2

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.20 Å

Oligo State

monomer

Ligands

1 x HEM: PROTOPORPHYRIN IX CONTAINING FE(Non-covalent)

HEM.1: 27 residues within 4Å: Chain A: Y.111, T.137, H.144, R.148, L.151, L.286, L.287, G.290, G.291, T.294, V.295, F.298, V.336, V.337, E.339, R.341, T.391, F.392, G.393, H.397, C.399, A.400, G.401, L.404, A.405, E.408 Ligands: CAM.2 19 PLIP interactions: 18 interactions with chain A, 1 Ligand-Water interactions Hydrophobic interactions: A:T.137, A:L.151, A:T.294, A:F.298, A:V.336, A:V.337, A:T.391, A:F.392, A:L.404 Hydrogen bonds: A:H.397 Water bridges: A:S.119 Salt bridges: A:H.144, A:R.148, A:R.341, A:H.397, A:H.397 pi-Stacking: A:F.392 Metal complexes: A:C.399, H2O.6

1 x CAM: CAMPHOR(Non-covalent)

CAM.2: 4 residues within 4Å: Chain A: G.290, I.437, V.438 Ligands: HEM.1 2 PLIP interactions: 2 interactions with chain A Hydrophobic interactions: A:I.437, A:V.438

1 x PEG: DI(HYDROXYETHYL)ETHER(Non-functional Binders)

PEG.3: 6 residues within 4Å: Chain A: H.305, H.309, L.312, W.378, K.379, L.380 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:L.380 Water bridges: A:R.333

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Yang, W. et al., The structure of CYP101D2 unveils a potential path for substrate entry into the active site. Biochem.J. (2011)

Release Date

2010-11-03

Peptides

Cytochrome P450: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Cytochrome P450

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