SMTL ID : 3nv7.1

Crystal structure of H.pylori phosphopantetheine adenylyltransferase mutant I4V/N76Y

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.75 Å

Oligo State

homo-tetramer

Ligands

16 x SO4: SULFATE ION(Non-functional Binders)

SO4.1: 5 residues within 4Å: Chain A: H.18, R.91 Chain C: S.128, S.129 Ligands: ACY.5 Ligand excluded by PLIP SO4.2: 4 residues within 4Å: Chain A: R.91 Chain D: D.95, F.96, E.97 Ligand excluded by PLIP SO4.3: 5 residues within 4Å: Chain A: T.10, K.42 Chain C: S.130, R.133 Ligands: ACY.5 Ligand excluded by PLIP SO4.4: 3 residues within 4Å: Chain A: H.38, S.47, L.48 Ligand excluded by PLIP SO4.6: 5 residues within 4Å: Chain B: H.18, R.91 Chain D: S.128, S.129 Ligands: ACY.10 Ligand excluded by PLIP SO4.7: 4 residues within 4Å: Chain B: R.91 Chain C: D.95, F.96, E.97 Ligand excluded by PLIP SO4.8: 5 residues within 4Å: Chain B: T.10, K.42 Chain D: S.130, R.133 Ligands: ACY.10 Ligand excluded by PLIP SO4.9: 3 residues within 4Å: Chain B: H.38, S.47, L.48 Ligand excluded by PLIP SO4.11: 5 residues within 4Å: Chain A: S.128, S.129 Chain C: H.18, R.91 Ligands: ACY.15 Ligand excluded by PLIP SO4.12: 4 residues within 4Å: Chain B: D.95, F.96, E.97 Chain C: R.91 Ligand excluded by PLIP SO4.13: 5 residues within 4Å: Chain A: S.130, R.133 Chain C: T.10, K.42 Ligands: ACY.15 Ligand excluded by PLIP SO4.14: 3 residues within 4Å: Chain C: H.38, S.47, L.48 Ligand excluded by PLIP SO4.16: 5 residues within 4Å: Chain B: S.128, S.129 Chain D: H.18, R.91 Ligands: ACY.20 Ligand excluded by PLIP SO4.17: 4 residues within 4Å: Chain A: D.95, F.96, E.97 Chain D: R.91 Ligand excluded by PLIP SO4.18: 5 residues within 4Å: Chain B: S.130, R.133 Chain D: T.10, K.42 Ligands: ACY.20 Ligand excluded by PLIP SO4.19: 3 residues within 4Å: Chain D: H.38, S.47, L.48 Ligand excluded by PLIP

4 x ACY: ACETIC ACID(Non-functional Binders)

ACY.5: 7 residues within 4Å: Chain A: G.9, T.10, F.11, H.18, K.42 Ligands: SO4.1, SO4.3 6 PLIP interactions: 5 interactions with chain A, 1 interactions with chain C Hydrogen bonds: A:T.10, A:F.11 Water bridges: A:D.12, C:S.129 Salt bridges: A:H.18, A:K.42 ACY.10: 7 residues within 4Å: Chain B: G.9, T.10, F.11, H.18, K.42 Ligands: SO4.6, SO4.8 6 PLIP interactions: 5 interactions with chain B, 1 interactions with chain D Hydrogen bonds: B:T.10, B:F.11 Water bridges: B:D.12, D:S.129 Salt bridges: B:H.18, B:K.42 ACY.15: 7 residues within 4Å: Chain C: G.9, T.10, F.11, H.18, K.42 Ligands: SO4.11, SO4.13 6 PLIP interactions: 5 interactions with chain C, 1 interactions with chain A Hydrogen bonds: C:T.10, C:F.11 Water bridges: C:D.12, A:S.129 Salt bridges: C:H.18, C:K.42 ACY.20: 7 residues within 4Å: Chain D: G.9, T.10, F.11, H.18, K.42 Ligands: SO4.16, SO4.18 6 PLIP interactions: 5 interactions with chain D, 1 interactions with chain B Hydrogen bonds: D:T.10, D:F.11 Water bridges: D:D.12, B:S.129 Salt bridges: D:H.18, D:K.42

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Chen, C.H. et al., Crystal structure of H.pylori phosphopantetheine adenylyltransferase mutant I4V/N76Y. To be Published

Release Date

2011-07-13

Peptides

Phosphopantetheine adenylyltransferase: ABCD

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
A

C
A

D
A

Phosphopantetheine adenylyltransferase