SMTL ID : 3nvq.1

Molecular mechanism of guidance cue recognition

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.40 Å

Oligo State

hetero-2-2-mer

Ligands

21 x NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG.1: 3 residues within 4Å: Chain A: V.18, G.19, N.61 Ligand excluded by PLIP NAG.2: 2 residues within 4Å: Chain A: V.112, N.113 Ligand excluded by PLIP NAG.3: 3 residues within 4Å: Chain A: Q.179, D.203, N.214 Ligand excluded by PLIP NAG.5: 5 residues within 4Å: Chain B: Q.49, N.52, T.54, E.55, P.56 Ligand excluded by PLIP NAG.6: 3 residues within 4Å: Chain B: L.42, N.107, S.109 Ligand excluded by PLIP NAG.7: 1 residues within 4Å: Chain B: N.115 Ligand excluded by PLIP NAG.8: 4 residues within 4Å: Chain B: W.206, N.207, S.300, Q.303 Ligand excluded by PLIP NAG.9: 3 residues within 4Å: Chain B: N.218, T.220, S.221 Ligand excluded by PLIP NAG.10: 2 residues within 4Å: Chain B: N.352, E.372 Ligand excluded by PLIP NAG.11: 1 residues within 4Å: Chain B: N.373 Ligand excluded by PLIP NAG.12: 2 residues within 4Å: Chain C: V.18, N.61 Ligand excluded by PLIP NAG.13: 3 residues within 4Å: Chain C: E.94, V.112, N.113 Ligand excluded by PLIP NAG.14: 4 residues within 4Å: Chain C: Q.179, D.203, L.213, N.214 Ligand excluded by PLIP NAG.15: 4 residues within 4Å: Chain C: P.284, N.286, H.363, D.388 Ligand excluded by PLIP NAG.16: 5 residues within 4Å: Chain D: Q.49, N.52, T.54, E.55, P.56 Ligand excluded by PLIP NAG.17: 1 residues within 4Å: Chain D: N.107 Ligand excluded by PLIP NAG.18: 1 residues within 4Å: Chain D: N.115 Ligand excluded by PLIP NAG.19: 3 residues within 4Å: Chain D: W.206, N.207, Q.303 Ligand excluded by PLIP NAG.20: 2 residues within 4Å: Chain D: N.218, S.221 Ligand excluded by PLIP NAG.21: 2 residues within 4Å: Chain D: N.352, E.372 Ligand excluded by PLIP NAG.22: 2 residues within 4Å: Chain D: E.372, N.373 Ligand excluded by PLIP

1 x NDG: 2-acetamido-2-deoxy-alpha-D-glucopyranose(Post Translational Modification)

NDG.4: 3 residues within 4Å: Chain A: N.286, H.363, D.388 3 PLIP interactions: 3 interactions with chain A Hydrophobic interactions: A:D.388 Hydrogen bonds: A:H.363, A:D.388

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Liu, H. et al., Structural Basis of Semaphorin-Plexin Recognition and Viral Mimicry from Sema7A and A39R Complexes with PlexinC1. Cell(Cambridge,Mass.) (2010)

Release Date

2010-09-15

Peptides

Semaphorin-7A: AC
Plexin-C1: BD

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

C
E

B
B

D
F

Semaphorin-7A

Plexin-C1

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