SMTL ID : 3nwa.3 (3 other biounits)

Glycoprotein B from Herpes simplex virus type 1, W174R mutant, low-pH

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.26 Å

Oligo State

homo-trimer

Ligands

3 x NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG.1: 3 residues within 4Å: Chain A: E.111, G.112, N.114 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:G.112 NAG.3: 3 residues within 4Å: Chain B: E.111, G.112, N.114 1 PLIP interactions: 1 interactions with chain B Hydrogen bonds: B:G.112 NAG.5: 3 residues within 4Å: Chain C: E.111, G.112, N.114 1 PLIP interactions: 1 interactions with chain C Hydrogen bonds: C:G.112

3 x MRY: MESO-ERYTHRITOL(Non-covalent)

MRY.2: 5 residues within 4Å: Chain A: Y.138, R.162, T.264 Chain C: N.682, H.685 6 PLIP interactions: 4 interactions with chain C, 2 interactions with chain A Hydrogen bonds: C:N.682, C:H.685, A:R.162, A:R.162 Water bridges: C:R.681, C:R.681 MRY.4: 5 residues within 4Å: Chain A: N.682, H.685 Chain B: Y.138, R.162, T.264 6 PLIP interactions: 4 interactions with chain A, 2 interactions with chain B Hydrogen bonds: A:N.682, A:H.685, B:R.162, B:R.162 Water bridges: A:R.681, A:R.681 MRY.6: 5 residues within 4Å: Chain B: N.682, H.685 Chain C: Y.138, R.162, T.264 6 PLIP interactions: 2 interactions with chain C, 4 interactions with chain B Hydrogen bonds: C:R.162, C:R.162, B:N.682, B:H.685 Water bridges: B:R.681, B:R.681

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Stampfer, S.D. et al., Structural basis of local, pH-dependent conformational changes in glycoprotein B from herpes simplex virus type 1. J.Virol. (2010)

Release Date

2010-12-01

Peptides

Envelope glycoprotein B: ABC

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
C

B
C

C
C

Envelope glycoprotein B

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