SMTL ID : 3nwf.3 (3 other biounits)

Glycoprotein B from Herpes simplex virus type 1, low-pH

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 3.00 Å

Oligo State

homo-trimer

Ligands

9 x NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG.1: 2 residues within 4Å: Chain A: G.112, N.114 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:G.112, A:N.114 NAG.2: 2 residues within 4Å: Chain A: N.371, L.416 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:N.371 NAG.3: 2 residues within 4Å: Chain A: N.647 Chain B: R.496 3 PLIP interactions: 1 interactions with chain A, 2 interactions with chain B Hydrogen bonds: A:N.647, B:R.496, B:R.496 NAG.4: 2 residues within 4Å: Chain B: G.112, N.114 2 PLIP interactions: 2 interactions with chain B Hydrogen bonds: B:G.112, B:N.114 NAG.5: 2 residues within 4Å: Chain B: N.371, L.416 1 PLIP interactions: 1 interactions with chain B Hydrogen bonds: B:N.371 NAG.6: 2 residues within 4Å: Chain B: N.647 Chain C: R.496 3 PLIP interactions: 2 interactions with chain C, 1 interactions with chain B Hydrogen bonds: C:R.496, C:R.496, B:N.647 NAG.7: 2 residues within 4Å: Chain C: G.112, N.114 2 PLIP interactions: 2 interactions with chain C Hydrogen bonds: C:G.112, C:N.114 NAG.8: 2 residues within 4Å: Chain C: N.371, L.416 1 PLIP interactions: 1 interactions with chain C Hydrogen bonds: C:N.371 NAG.9: 2 residues within 4Å: Chain A: R.496 Chain C: N.647 3 PLIP interactions: 2 interactions with chain A, 1 interactions with chain C Hydrogen bonds: A:R.496, A:R.496, C:N.647

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Stampfer, S.D. et al., Structural basis of local, pH-dependent conformational changes in glycoprotein B from herpes simplex virus type 1. J.Virol. (2010)

Release Date

2010-12-01

Peptides

Envelope glycoprotein B: ABC

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
C

B
C

C
C

Envelope glycoprotein B

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