SMTL ID : 3nwq.1

X-ray structure of ester chemical analogue [O-Ile50,O-Ile50']HIV-1 protease complexed with MVT-101

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.50 Å

Oligo State

homo-dimer

Ligands

1 x 2NC: N-{(2S)-2-[(N-acetyl-L-threonyl-L-isoleucyl)amino]hexyl}-L-norleucyl-L-glutaminyl-N~5~-[amino(iminio)methyl]-L-ornithinamide(Non-covalent)

2NC.1: 27 residues within 4Å: Chain A: R.8, L.23, D.25, G.27, A.28, D.29, D.30, I.47, G.48, G.49, X.50, P.81, V.82, I.84 Chain B: R.8, D.25, G.27, A.28, D.29, D.30, I.47, G.48, G.49, X.50, T.80, P.81, V.82 27 PLIP interactions: 12 interactions with chain B, 15 interactions with chain A Hydrophobic interactions: B:A.28, B:P.81, A:L.23, A:D.30, A:I.47, A:P.81 Hydrogen bonds: B:R.8, B:G.27, B:D.29, B:D.29, B:D.30, B:D.30, B:G.48, B:G.48, A:G.27, A:D.29, A:G.48, A:G.48 Water bridges: B:G.27, A:R.8, A:R.8, A:R.8, A:R.8, A:R.8, A:G.48, A:G.48 Salt bridges: B:D.29

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Torbeev, V.Y. et al., Protein conformational dynamics in the mechanism of HIV-1 protease catalysis. Proc.Natl.Acad.Sci.USA (2011)

Release Date

2011-11-02

Peptides

protease: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

protease

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