SMTL ID : 3nwr.1

Crystal structure of a rubisco-like protein from Burkholderia fungorum

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.50 Å

Oligo State

homo-dimer

Ligands

6 x SO4: SULFATE ION(Non-functional Binders)

SO4.1: 6 residues within 4Å: Chain A: K.324, S.357, G.358, G.381, G.382 Ligands: GOL.5 7 PLIP interactions: 7 interactions with chain A Hydrogen bonds: A:G.358, A:G.381, A:G.382 Water bridges: A:Q.359, A:Q.359, A:G.383 Salt bridges: A:K.324 SO4.2: 3 residues within 4Å: Chain A: R.161, R.228, R.399 6 PLIP interactions: 6 interactions with chain A Water bridges: A:R.228, A:R.228, A:R.399 Salt bridges: A:R.161, A:R.228, A:R.399 SO4.3: 3 residues within 4Å: Chain A: L.25, D.26, R.29 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:D.26 Salt bridges: A:R.29 SO4.9: 6 residues within 4Å: Chain B: K.324, S.357, G.358, G.381, G.382 Ligands: GOL.13 7 PLIP interactions: 7 interactions with chain B Hydrogen bonds: B:G.358, B:G.381, B:G.382 Water bridges: B:Q.359, B:Q.359, B:G.383 Salt bridges: B:K.324 SO4.10: 3 residues within 4Å: Chain B: R.161, R.228, R.399 6 PLIP interactions: 6 interactions with chain B Water bridges: B:R.228, B:R.228, B:R.399 Salt bridges: B:R.161, B:R.228, B:R.399 SO4.11: 3 residues within 4Å: Chain B: L.25, D.26, R.29 2 PLIP interactions: 2 interactions with chain B Hydrogen bonds: B:D.26 Salt bridges: B:R.29

10 x GOL: GLYCEROL(Non-functional Binders)

GOL.4: 8 residues within 4Å: Chain A: P.145, H.147, G.148, V.149, A.150, D.348, A.350, V.351 6 PLIP interactions: 6 interactions with chain A Hydrogen bonds: A:V.149, A:A.150, A:D.348 Water bridges: A:H.147, A:G.151, A:A.350 GOL.5: 5 residues within 4Å: Chain A: K.324, W.360, G.382, G.383 Ligands: SO4.1 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:K.324, A:K.324, A:W.360 Water bridges: A:G.383 GOL.6: 8 residues within 4Å: Chain A: M.216, V.219, R.223, P.229, V.230, G.254, G.255, S.256 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:V.230, A:G.255, A:S.256 Water bridges: A:V.219, A:R.228 GOL.7: 5 residues within 4Å: Chain A: N.202, D.238 Chain B: D.104, A.105, N.106 7 PLIP interactions: 2 interactions with chain A, 5 interactions with chain B Hydrogen bonds: A:N.202, B:D.104, B:D.104, B:A.105, B:N.106 Water bridges: A:D.238, B:A.105 GOL.8: 4 residues within 4Å: Chain A: I.333, R.337, D.369, R.372 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:R.337, A:R.337, A:R.372 Water bridges: A:R.372 GOL.12: 8 residues within 4Å: Chain B: P.145, H.147, G.148, V.149, A.150, D.348, A.350, V.351 6 PLIP interactions: 6 interactions with chain B Hydrogen bonds: B:V.149, B:A.150, B:D.348 Water bridges: B:H.147, B:G.151, B:A.350 GOL.13: 5 residues within 4Å: Chain B: K.324, W.360, G.382, G.383 Ligands: SO4.9 4 PLIP interactions: 4 interactions with chain B Hydrogen bonds: B:K.324, B:K.324, B:W.360 Water bridges: B:G.383 GOL.14: 8 residues within 4Å: Chain B: M.216, V.219, R.223, P.229, V.230, G.254, G.255, S.256 5 PLIP interactions: 5 interactions with chain B Hydrogen bonds: B:V.230, B:G.255, B:S.256 Water bridges: B:V.219, B:R.228 GOL.15: 5 residues within 4Å: Chain A: D.104, A.105, N.106 Chain B: N.202, D.238 6 PLIP interactions: 2 interactions with chain B, 4 interactions with chain A Hydrogen bonds: B:N.202, A:D.104, A:A.105, A:N.106 Water bridges: B:D.238, A:A.105 GOL.16: 4 residues within 4Å: Chain B: I.333, R.337, D.369, R.372 4 PLIP interactions: 4 interactions with chain B Hydrogen bonds: B:R.337, B:R.337, B:R.372 Water bridges: B:R.372

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Fedorov, A.A. et al., Crystal structure of a rubisco-like protein from Burkholderia fungorum. To be Published

Release Date

2010-07-28

Peptides

A rubisco-like protein: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
A

A rubisco-like protein