SMTL ID : 3nxp.1

Crystal structure of human prethrombin-1

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.20 Å

Oligo State

monomer

Ligands

1 x NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG.1: 3 residues within 4Å: Chain A: L.211, N.218, T.220 2 PLIP interactions: 2 interactions with chain A Hydrophobic interactions: A:L.211 Hydrogen bonds: A:N.218

2 x TRS: 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL(Non-functional Binders)

TRS.2: 2 residues within 4Å: Chain A: N.256, R.258 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:N.256, A:R.258 TRS.3: 7 residues within 4Å: Chain A: K.310, R.362, G.363, D.364, A.365, D.399, G.400 7 PLIP interactions: 7 interactions with chain A Hydrogen bonds: A:K.310, A:R.362, A:R.362, A:G.363, A:G.363, A:A.365, A:A.365

2 x GOL: GLYCEROL(Non-functional Binders)

GOL.4: 7 residues within 4Å: Chain A: D.84, F.85, Y.250, P.253, W.414, V.418, Q.421 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:D.84, A:D.84, A:F.85, A:W.414, A:Q.421 GOL.5: 2 residues within 4Å: Chain A: Q.189, R.227 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:Q.189, A:R.227

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Chen, Z. et al., Crystal structure of prethrombin-1. Proc.Natl.Acad.Sci.USA (2010)

Release Date

2010-11-10

Peptides

Prethrombin-1: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Prethrombin-1