SMTL ID : 3nys.1

X-ray structure of the K185A mutant of WbpE (WlbE) from pseudomonas aeruginosa in complex with PLP at 1.45 angstrom resolution

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.45 Å

Oligo State

homo-dimer

Ligands

2 x PLP: PYRIDOXAL-5'-PHOSPHATE(Non-covalent)

PLP.1: 16 residues within 4Å: Chain A: N.58, G.59, T.60, L.63, T.84, Y.85, A.87, T.88, V.130, D.156, A.158, Q.159, S.180, G.193, Y.309 Chain B: N.227 15 PLIP interactions: 13 interactions with chain A, 2 interactions with chain B Hydrophobic interactions: A:Y.85, A:A.87, A:V.130, A:A.158 Hydrogen bonds: A:G.59, A:T.60, A:Q.159, A:S.180, A:G.193, A:Y.309, A:Y.309, B:N.227 Water bridges: A:Y.85, A:D.192, B:R.229 PLP.3: 16 residues within 4Å: Chain A: N.227 Chain B: N.58, G.59, T.60, L.63, T.84, Y.85, A.87, T.88, V.130, D.156, A.158, Q.159, S.180, G.193, Y.309 14 PLIP interactions: 12 interactions with chain B, 2 interactions with chain A Hydrophobic interactions: B:Y.85, B:A.87, B:V.130, B:A.158 Hydrogen bonds: B:G.59, B:T.60, B:T.60, B:Q.159, B:S.180, B:G.193, B:Y.309, A:N.227 Water bridges: B:Y.85, A:R.229

2 x NA: SODIUM ION(Non-functional Binders)

NA.2: 1 residues within 4Å: Ligands: NA.4 3 PLIP interactions: 1 interactions with chain A, 2 interactions with chain B Water bridges: A:D.231, B:D.231 Hydrogen bonds: B:D.231 NA.4: 1 residues within 4Å: Ligands: NA.2 3 PLIP interactions: 1 interactions with chain A, 2 interactions with chain B Water bridges: A:D.231, B:D.231 Hydrogen bonds: B:D.231

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Dow, G.T. et al., Structural investigation on WlaRG from Campylobacter jejuni: A sugar aminotransferase. Protein Sci. (2017)

Release Date

2010-07-28

Peptides

Aminotransferase WbpE: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
A

Aminotransferase WbpE

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