SMTL ID : 3nyu.1 (1 other biounit)

X-ray crystal structure of the Wbpe (WlbE) aminotransferase from pseudomonas aeruginosa as the PLP internal aldimine adduct with lysine 185

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.50 Å

Oligo State

homo-dimer

Ligands

5 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.1: 8 residues within 4Å: Chain A: L.7, P.183, K.185, P.186, L.187, G.188, K.241, R.252 6 PLIP interactions: 6 interactions with chain A Hydrogen bonds: A:G.188, A:K.241, A:R.252 Water bridges: A:Q.10, A:K.241, A:R.252 EDO.3: 4 residues within 4Å: Chain B: G.29, Q.30, Y.31, I.32 4 PLIP interactions: 2 interactions with chain A, 2 interactions with chain B Water bridges: A:S.184, A:S.184 Hydrogen bonds: B:I.32, B:I.32 EDO.4: 6 residues within 4Å: Chain B: L.7, P.183, K.185, P.186, G.188, R.252 6 PLIP interactions: 6 interactions with chain B Hydrogen bonds: B:G.188, B:K.241, B:R.252 Water bridges: B:Q.10, B:K.241, B:E.248 EDO.5: 7 residues within 4Å: Chain B: A.50, C.171, N.172, S.174, F.197, T.198, N.199 5 PLIP interactions: 5 interactions with chain B Hydrogen bonds: B:N.172, B:F.197 Water bridges: B:K.168, B:N.199, B:N.199 EDO.6: 6 residues within 4Å: Chain A: Y.85, F.182, K.185 Chain B: H.213, N.227, R.229 2 PLIP interactions: 2 interactions with chain B Hydrogen bonds: B:R.229, B:R.229

1 x NA: SODIUM ION(Non-functional Binders)

NA.2: 0 residues within 4Å: (No contacts) 3 PLIP interactions: 1 interactions with chain A, 2 interactions with chain B Water bridges: A:D.231, B:D.231 Hydrogen bonds: B:D.231

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Dow, G.T. et al., Structural investigation on WlaRG from Campylobacter jejuni: A sugar aminotransferase. Protein Sci. (2017)

Release Date

2010-07-28

Peptides

Aminotransferase WbpE: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Aminotransferase WbpE

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