SMTL ID : 3nzn.2 (1 other biounit)

The crystal structure of the Glutaredoxin from Methanosarcina mazei Go1

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.10 Å

Oligo State

homo-tetramer

Ligands

2 x GOL: GLYCEROL(Non-functional Binders)

GOL.1: 4 residues within 4Å: Chain A: K.93, E.94, K.95, E.96 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:E.94, A:K.95, A:E.96 GOL.6: 4 residues within 4Å: Chain C: K.93, E.94, K.95, E.96 3 PLIP interactions: 3 interactions with chain C Hydrogen bonds: C:E.94, C:K.95, C:E.96

8 x SO4: SULFATE ION(Non-functional Binders)

SO4.2: 3 residues within 4Å: Chain A: G.22, K.23, N.84 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:K.23 SO4.3: 3 residues within 4Å: Chain A: G.59, K.60 Chain D: H.15 4 PLIP interactions: 1 interactions with chain D, 3 interactions with chain A Salt bridges: D:H.15, A:K.60 Hydrogen bonds: A:K.60, A:E.61 SO4.4: 5 residues within 4Å: Chain A: S.1, N.2, K.10, H.15, Y.51 8 PLIP interactions: 8 interactions with chain A Hydrogen bonds: A:Y.51 Water bridges: A:S.1, A:K.10, A:K.10, A:N.14 Salt bridges: A:K.10, A:H.15, A:K.39 SO4.5: 2 residues within 4Å: Chain A: G.18, G.46 1 PLIP interactions: 1 interactions with chain A Water bridges: A:V.19 SO4.7: 3 residues within 4Å: Chain C: G.22, K.23, N.84 1 PLIP interactions: 1 interactions with chain C Hydrogen bonds: C:K.23 SO4.8: 3 residues within 4Å: Chain B: H.15 Chain C: G.59, K.60 4 PLIP interactions: 3 interactions with chain C, 1 interactions with chain B Hydrogen bonds: C:K.60, C:E.61 Salt bridges: C:K.60, B:H.15 SO4.9: 5 residues within 4Å: Chain C: S.1, N.2, K.10, H.15, Y.51 8 PLIP interactions: 8 interactions with chain C Water bridges: C:S.1, C:S.1, C:K.10, C:K.10, C:N.14 Salt bridges: C:K.10, C:H.15, C:K.39 SO4.10: 2 residues within 4Å: Chain C: G.18, G.46 1 PLIP interactions: 1 interactions with chain C Water bridges: C:V.19

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Zhang, R. et al., The crystal structure of the Glutaredoxin from Methanosarcina mazei Go1. To be Published

Release Date

2010-07-28

Peptides

Glutaredoxin: ABCD

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
A

D
B

Glutaredoxin

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