SMTL ID : 3o1c.1

High resolution crystal structure of histidine triad nucleotide-binding protein 1 (Hint1) C38A mutant from rabbit complexed with Adenosine

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.08 Å

Oligo State

homo-dimer

Ligands

2 x ADN: ADENOSINE(Non-covalent)

ADN.1: 12 residues within 4Å: Chain A: I.18, F.19, I.22, F.41, H.42, D.43, I.44, S.45, L.53, S.107, H.112, H.114 9 PLIP interactions: 9 interactions with chain A Hydrogen bonds: A:I.44, A:S.45, A:S.107 Water bridges: A:P.28, A:P.28, A:D.43, A:S.45, A:S.107, A:H.114 ADN.4: 12 residues within 4Å: Chain B: I.18, F.19, I.22, F.41, H.42, D.43, I.44, S.45, L.53, S.107, H.112, H.114 9 PLIP interactions: 9 interactions with chain B Hydrogen bonds: B:I.44, B:S.45, B:S.107 Water bridges: B:P.28, B:P.28, B:D.43, B:S.45, B:S.107, B:H.114

4 x NA: SODIUM ION(Non-functional Binders)

NA.2: 3 residues within 4Å: Chain A: G.14, K.58, H.59 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:G.14, A:H.59 Water bridges: A:G.15, A:H.59 NA.3: 2 residues within 4Å: Chain A: R.119, Q.120 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:R.119, A:Q.120 NA.5: 3 residues within 4Å: Chain B: G.14, K.58, H.59 3 PLIP interactions: 3 interactions with chain B Hydrogen bonds: B:G.14, B:H.59 Water bridges: B:G.15 NA.6: 2 residues within 4Å: Chain B: R.119, Q.120 2 PLIP interactions: 2 interactions with chain B Hydrogen bonds: B:R.119, B:Q.120

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Ozga, M. et al., Histidine Triad Nucleotide-binding Protein 1 (HINT-1) Phosphoramidase Transforms Nucleoside 5'-O-Phosphorothioates to Nucleoside 5'-O-Phosphates. J.Biol.Chem. (2010)

Release Date

2010-08-04

Peptides

Histidine triad nucleotide-binding protein 1: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
A

Histidine triad nucleotide-binding protein 1