SMTL ID : 3o1l.1 (3 other biounits)

Crystal structure of a formyltetrahydrofolate deformylase (PSPTO_4314) from Pseudomonas syringae pv. tomato str. DC3000 at 2.20 A resolution

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.20 Å

Oligo State

homo-dimer

Ligands

8 x GOL: GLYCEROL(Non-functional Binders)

GOL.1: 8 residues within 4Å: Chain A: D.31, R.32, V.33, G.34, I.35, V.36, S.57, F.64 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:D.31, A:I.35, A:V.36, A:S.57 Water bridges: A:H.55 GOL.2: 3 residues within 4Å: Chain A: R.32, E.92, F.93 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:E.92, A:E.92 GOL.3: 6 residues within 4Å: Chain A: V.26, D.96, W.97, R.98, L.292, V.293 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:V.26, A:R.98, A:V.293, A:V.293 GOL.4: 4 residues within 4Å: Chain A: H.56, D.58, H.294, K.297 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:H.56, A:D.58, A:H.294 GOL.11: 7 residues within 4Å: Chain B: V.26, A.28, D.96, W.97, R.98, L.292, V.293 4 PLIP interactions: 4 interactions with chain B Hydrogen bonds: B:W.97, B:R.98, B:V.293 Water bridges: B:V.293 GOL.12: 7 residues within 4Å: Chain B: D.31, R.32, V.33, I.35, V.36, S.57, F.64 7 PLIP interactions: 7 interactions with chain B Hydrogen bonds: B:I.35, B:V.36, B:S.57 Water bridges: B:D.31, B:A.37, B:S.57, B:S.57 GOL.13: 1 residues within 4Å: Chain B: N.41 2 PLIP interactions: 2 interactions with chain B Hydrogen bonds: B:N.41 Water bridges: B:N.41 GOL.14: 3 residues within 4Å: Chain B: W.126, H.127, D.129 3 PLIP interactions: 3 interactions with chain B Hydrogen bonds: B:W.126, B:H.127, B:D.129

9 x SO4: SULFATE ION(Non-functional Binders)

SO4.5: 4 residues within 4Å: Chain A: R.261 Chain B: S.54, H.55, F.301 7 PLIP interactions: 3 interactions with chain B, 4 interactions with chain A Hydrogen bonds: B:H.55 Water bridges: B:S.54, B:H.55, A:R.261, A:R.261, A:R.261 Salt bridges: A:R.261 SO4.6: 5 residues within 4Å: Chain A: M.191, H.211, A.220, K.221, P.222 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:K.221 Salt bridges: A:H.211 SO4.7: 6 residues within 4Å: Chain A: S.113, R.114, N.141, H.142, M.191, Q.192 6 PLIP interactions: 6 interactions with chain A Hydrogen bonds: A:S.113, A:R.114, A:N.141, A:N.141, A:Q.192 Salt bridges: A:H.142 SO4.8: 6 residues within 4Å: Chain A: R.114, N.141, H.142, Q.143, D.144, H.158 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:R.114, A:Q.143, A:D.144 Salt bridges: A:H.142, A:H.158 SO4.9: 4 residues within 4Å: Chain A: V.256, F.270, D.273 Chain B: R.281 3 PLIP interactions: 1 interactions with chain B, 2 interactions with chain A Salt bridges: B:R.281 Hydrogen bonds: A:D.273, A:D.273 SO4.10: 5 residues within 4Å: Chain A: P.30, R.32, S.61, G.62, W.63 1 PLIP interactions: 1 interactions with chain A Salt bridges: A:R.32 SO4.15: 6 residues within 4Å: Chain B: S.113, R.114, N.141, H.142, M.191, Q.192 4 PLIP interactions: 4 interactions with chain B Hydrogen bonds: B:S.113, B:N.141, B:Q.192 Salt bridges: B:H.142 SO4.16: 5 residues within 4Å: Chain B: M.191, H.211, A.220, K.221, P.222 4 PLIP interactions: 4 interactions with chain B Hydrogen bonds: B:K.221 Water bridges: B:Y.223 Salt bridges: B:H.211, B:K.221 SO4.17: 3 residues within 4Å: Chain B: L.79, R.83, Q.104 4 PLIP interactions: 4 interactions with chain B Hydrogen bonds: B:Q.104 Water bridges: B:D.80, B:R.83 Salt bridges: B:R.83

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Joint Center for Structural Genomics (JCSG), Crystal structure of a formyltetrahydrofolate deformylase (PSPTO_4314) from Pseudomonas syringae pv. tomato str. DC3000 at 2.20 A resolution. To be published

Release Date

2010-09-15

Peptides

Formyltetrahydrofolate deformylase: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Formyltetrahydrofolate deformylase

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