SMTL ID : 3o22.1

Structure-function analysis of human L-Prostaglandin D Synthase bound with fatty acid

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.40 Å

Oligo State

monomer

Ligands

2 x OLA: OLEIC ACID(Non-covalent)

OLA.1: 11 residues within 4Å: Chain A: L.27, K.31, L.34, S.53, F.55, R.64, M.66, M.117 Ligands: PLM.2, OLA.3, PLM.4 3 PLIP interactions: 3 interactions with chain A Hydrophobic interactions: A:L.34, A:F.55 Salt bridges: A:K.31 OLA.3: 15 residues within 4Å: Chain A: S.17, L.20, W.26, K.30, K.31, L.34, M.36, S.53, M.66, T.119, Y.121, L.152 Ligands: OLA.1, PLM.2, PLM.4 9 PLIP interactions: 9 interactions with chain A Hydrophobic interactions: A:L.20, A:W.26, A:K.30, A:K.31, A:L.34, A:T.119, A:L.152 Water bridges: A:K.31 Salt bridges: A:K.31

2 x PLM: PALMITIC ACID(Non-covalent)

PLM.2: 14 residues within 4Å: Chain A: N.23, S.24, W.26, L.27, M.66, Y.88, V.90, S.105, D.114, F.115, M.117 Ligands: OLA.1, OLA.3, PLM.4 10 PLIP interactions: 10 interactions with chain A Hydrophobic interactions: A:W.26, A:Y.88, A:V.90, A:D.114, A:F.115, A:F.115, A:F.115, A:F.115, A:F.115 Hydrogen bonds: A:N.23 PLM.4: 13 residues within 4Å: Chain A: S.24, W.26, L.51, M.66, Y.88, V.90, S.105, F.115, M.117, Y.121 Ligands: OLA.1, PLM.2, OLA.3 4 PLIP interactions: 4 interactions with chain A Hydrophobic interactions: A:W.26, A:L.51, A:V.90, A:F.115

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Zhou, Y. et al., Structure-function analysis of human L-Prostaglandin D Synthase bound with fatty acid. To be Published

Release Date

2010-09-22

Peptides

Prostaglandin-H2 D-isomerase: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Prostaglandin-H2 D-isomerase

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