- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 1.78 Å
- Oligo State
- homo-dimer
- Ligands
- 4 x ZN: ZINC ION(Non-covalent)
- 2 x OGA: N-OXALYLGLYCINE(Non-covalent)
OGA.3: 11 residues within 4Å:- Chain A: V.184, A.194, L.200, H.203, D.205, H.348, R.350, R.361, L.363
- Ligands: ZN.1, NM2.4
3 PLIP interactions:3 interactions with chain A- Salt bridges: A:H.203, A:R.350, A:R.361
OGA.12: 11 residues within 4Å:- Chain B: V.184, A.194, L.200, H.203, D.205, H.348, R.350, R.361, L.363
- Ligands: ZN.10, NM2.13
3 PLIP interactions:3 interactions with chain B- Salt bridges: B:H.203, B:R.350, B:R.361
- 2 x NM2: 3-CARBOXY-N,N,N-TRIMETHYLPROPAN-1-AMINIUM(Non-covalent)
NM2.4: 12 residues within 4Å:- Chain A: Y.178, W.182, N.192, A.194, Y.195, D.205, Y.206, P.207, N.293, T.296, Y.367
- Ligands: OGA.3
8 PLIP interactions:8 interactions with chain A- Hydrogen bonds: A:N.192, A:N.192, A:Y.206, A:N.293
- Salt bridges: A:D.205
- pi-Cation interactions: A:Y.178, A:W.182, A:W.182
NM2.13: 12 residues within 4Å:- Chain B: Y.178, W.182, N.192, A.194, Y.195, D.205, Y.206, P.207, N.293, T.296, Y.367
- Ligands: OGA.12
11 PLIP interactions:11 interactions with chain B- Hydrogen bonds: B:N.192, B:N.192, B:Y.206, B:N.293, B:Y.367
- Water bridges: B:T.296, B:T.296
- Salt bridges: B:D.205
- pi-Cation interactions: B:Y.178, B:W.182, B:W.182
- 10 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)
EDO.5: 1 residues within 4Å:- Chain A: K.275
2 PLIP interactions:2 interactions with chain A- Hydrogen bonds: A:K.275
- Water bridges: A:K.275
EDO.6: 5 residues within 4Å:- Chain A: W.117, G.118, E.120, N.237, K.241
4 PLIP interactions:4 interactions with chain A- Hydrogen bonds: A:E.120, A:N.237, A:K.241, A:K.241
EDO.7: 4 residues within 4Å:- Chain A: K.99, R.102
- Chain B: D.302, P.304
4 PLIP interactions:1 interactions with chain B, 3 interactions with chain A- Hydrogen bonds: B:D.302, A:K.99, A:R.102, A:R.102
EDO.8: 6 residues within 4Å:- Chain A: C.239, Q.240, F.250, G.285, Q.286, V.287
4 PLIP interactions:4 interactions with chain A- Hydrogen bonds: A:C.239, A:G.285, A:V.287
- Water bridges: A:Q.240
EDO.9: 3 residues within 4Å:- Chain A: Q.115, L.121, Q.122
1 PLIP interactions:1 interactions with chain A- Hydrogen bonds: A:Q.122
EDO.14: 1 residues within 4Å:- Chain B: K.275
2 PLIP interactions:2 interactions with chain B- Hydrogen bonds: B:K.275
- Water bridges: B:K.275
EDO.15: 5 residues within 4Å:- Chain B: W.117, G.118, E.120, N.237, K.241
4 PLIP interactions:4 interactions with chain B- Hydrogen bonds: B:E.120, B:N.237, B:K.241, B:K.241
EDO.16: 4 residues within 4Å:- Chain A: D.302, P.304
- Chain B: K.99, R.102
4 PLIP interactions:3 interactions with chain B, 1 interactions with chain A- Hydrogen bonds: B:K.99, B:R.102, B:R.102, A:D.302
EDO.17: 6 residues within 4Å:- Chain B: C.239, Q.240, F.250, G.285, Q.286, V.287
4 PLIP interactions:4 interactions with chain B- Hydrogen bonds: B:C.239, B:G.285, B:V.287
- Water bridges: B:Q.240
EDO.18: 3 residues within 4Å:- Chain B: Q.115, L.121, Q.122
1 PLIP interactions:1 interactions with chain B- Hydrogen bonds: B:Q.122
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Leung, I.K. et al., Structural and mechanistic studies on gamma-butyrobetaine hydroxylase. Chem. Biol. (2010)
- Release Date
- 2010-09-15
- Peptides
- Gamma-butyrobetaine dioxygenase: AB
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
A
- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 1.78 Å
- Oligo State
- homo-dimer
- Ligands
- 4 x ZN: ZINC ION(Non-covalent)
- 2 x OGA: N-OXALYLGLYCINE(Non-covalent)
- 2 x NM2: 3-CARBOXY-N,N,N-TRIMETHYLPROPAN-1-AMINIUM(Non-covalent)
- 10 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Leung, I.K. et al., Structural and mechanistic studies on gamma-butyrobetaine hydroxylase. Chem. Biol. (2010)
- Release Date
- 2010-09-15
- Peptides
- Gamma-butyrobetaine dioxygenase: AB
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
A