SMTL ID : 3o2k.1

Crystal Structure of Brevianamide F Prenyltransferase Complexed with Brevianamide F and Dimethylallyl S-thiolodiphosphate

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.40 Å

Oligo State

homo-dimer

Ligands

2 x DST: DIMETHYLALLYL S-THIOLODIPHOSPHATE(Non-covalent)

DST.1: 11 residues within 4Å: Chain A: R.113, K.201, Y.203, K.294, Y.296, M.364, Q.380, Y.382, Y.446, Y.450 Ligands: QRP.2 12 PLIP interactions: 12 interactions with chain A Hydrophobic interactions: A:Y.296, A:Y.382, A:Y.450 Hydrogen bonds: A:R.113, A:D.191, A:Q.380, A:Y.450 Water bridges: A:Y.203, A:Y.203 Salt bridges: A:R.113, A:K.201, A:K.294 DST.6: 11 residues within 4Å: Chain B: R.113, K.201, Y.203, K.294, Y.296, M.364, Q.380, Y.382, Y.446, Y.450 Ligands: QRP.7 12 PLIP interactions: 12 interactions with chain B Hydrophobic interactions: B:Y.296, B:Y.382, B:Y.450 Hydrogen bonds: B:R.113, B:D.191, B:Y.203, B:Q.380, B:Y.382, B:Y.446 Salt bridges: B:R.113, B:K.201, B:K.294

2 x QRP: (3S,8aS)-3-(1H-indol-3-ylmethyl)hexahydropyrrolo[1,2-a]pyrazine-1,4-dione(Non-covalent)

QRP.2: 13 residues within 4Å: Chain A: G.93, M.94, V.95, L.96, E.102, W.182, L.187, Y.203, Y.205, F.280, Y.435, Y.450 Ligands: DST.1 5 PLIP interactions: 5 interactions with chain A Hydrophobic interactions: A:L.96, A:L.187, A:Y.203 Hydrogen bonds: A:M.94, A:E.102 QRP.7: 13 residues within 4Å: Chain B: G.93, M.94, V.95, L.96, E.102, W.182, L.187, Y.203, Y.205, F.280, Y.435, Y.450 Ligands: DST.6 6 PLIP interactions: 6 interactions with chain B Hydrophobic interactions: B:L.96, B:L.187, B:Y.203 Hydrogen bonds: B:M.94, B:E.102, B:Y.205

2 x MES: 2-(N-MORPHOLINO)-ETHANESULFONIC ACID(Non-covalent)

MES.3: 7 residues within 4Å: Chain A: R.66, H.67, P.71 Chain B: L.27, G.29, R.66 Ligands: MES.8 No protein-ligand interaction detected (PLIP) MES.8: 7 residues within 4Å: Chain A: L.27, G.29, R.66 Chain B: R.66, H.67, P.71 Ligands: MES.3 No protein-ligand interaction detected (PLIP)

4 x CL: CHLORIDE ION(Non-functional Binders)

CL.4: 2 residues within 4Å: Chain A: T.164, K.165 Ligand excluded by PLIP CL.5: 1 residues within 4Å: Chain A: K.392 Ligand excluded by PLIP CL.9: 2 residues within 4Å: Chain B: T.164, K.165 Ligand excluded by PLIP CL.10: 1 residues within 4Å: Chain B: K.392 Ligand excluded by PLIP

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Jost, M. et al., Structure-function analysis of an enzymatic prenyl transfer reaction identifies a reaction chamber with modifiable specificity. J.Am.Chem.Soc. (2010)

Release Date

2010-12-08

Peptides

Brevianamide F prenyltransferase: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
A

Brevianamide F prenyltransferase

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