SMTL ID : 3o2p.1 (2 other biounits)

A Dual E3 Mechanism for Rub1 Ligation to Cdc53: Dcn1(P)-Cdc53(WHB)

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.23 Å

Oligo State

hetero-1-1-mer

Ligands

3 x GOL: GLYCEROL(Non-functional Binders)

GOL.1: 3 residues within 4Å: Chain A: D.86, H.90 Ligands: GOL.2 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:H.90 Water bridges: A:H.90, A:H.90 GOL.2: 8 residues within 4Å: Chain A: D.39, L.40, A.41, D.86, L.89, H.90, Y.132 Ligands: GOL.1 6 PLIP interactions: 6 interactions with chain A Hydrogen bonds: A:D.39, A:L.40, A:A.41, A:Y.132, A:Y.132 Water bridges: A:D.39 GOL.3: 10 residues within 4Å: Chain A: A.186, W.187, P.188, F.189 Chain B: H.40, K.63, I.66, D.67, R.77, Y.84 9 PLIP interactions: 6 interactions with chain B, 3 interactions with chain A Hydrogen bonds: B:H.40, B:D.67, B:R.77, B:R.77, B:Y.84, B:Y.84, A:F.189 Water bridges: A:D.159, A:I.190

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Scott, D.C. et al., A dual E3 mechanism for Rub1 ligation to Cdc53. Mol.Cell (2010)

Release Date

2010-09-15

Peptides

Defective in cullin neddylation protein 1: A
Cell division control protein 53: B

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
E

Defective in cullin neddylation protein 1

Cell division control protein 53

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