SMTL ID : 3o3g.1

T. maritima RNase H2 in complex with nucleic acid substrate and calcium ions

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.10 Å

Oligo State

monomer

Ligands

5 x CA: CALCIUM ION(Non-covalent)(Non-functional Binders)

CA.1: 4 residues within 4Å: Chain A: D.17, E.18 Chain C: C.6, T.7 4 PLIP interactions: 2 interactions with chain A, 2 Ligand-Water interactions Metal complexes: A:D.17, A:E.18, H2O.1, H2O.1 CA.2: 5 residues within 4Å: Chain A: D.17, E.18, D.106 Chain C: C.5, C.6 3 PLIP interactions: 3 interactions with chain A Metal complexes: A:D.17, A:E.18, A:D.106 CA.3: 2 residues within 4Å: Chain A: D.123 Chain C: C.6 No protein-ligand interaction detected (PLIP) CA.4: 1 residues within 4Å: Chain A: N.215 No protein-ligand interaction detected (PLIP) CA.5: 0 residues within 4Å: (No contacts) No protein-ligand interaction detected (PLIP)

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Rychlik, M.P. et al., Crystal Structures of RNase H2 in Complex with Nucleic Acid Reveal the Mechanism of RNA-DNA Junction Recognition and Cleavage. Mol.Cell (2010)

Release Date

2010-12-08

Peptides

Ribonuclease HII: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Ribonuclease HII