SMTL ID : 3o3o.1

(R)-2-hydroxyisocaproyl-CoA dehydratase in complex with (R)-2-hydroxyisocaproate

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.00 Å

Oligo State

hetero-1-1-mer

Ligands

2 x SF4: IRON/SULFUR CLUSTER(Non-covalent)

SF4.1: 7 residues within 4Å: Chain A: C.84, I.116, C.117, S.345, C.346, Q.375 Ligands: 2RH.2 4 PLIP interactions: 4 interactions with chain A, Salt bridges: A:E.55 Metal complexes: A:C.84, A:C.117, A:C.346 SF4.3: 9 residues within 4Å: Chain B: C.72, I.74, M.75, C.99, L.102, M.322, C.325, P.327 Ligands: H2S.4 4 PLIP interactions: 4 interactions with chain B, Salt bridges: B:D.326 Metal complexes: B:C.72, B:C.99, B:C.325

1 x 2RH: (2R)-2-hydroxy-4-methylpentanoic acid(Non-covalent)

2RH.2: 8 residues within 4Å: Chain A: S.37, E.55, Y.86, I.265, W.294, M.313, N.315 Ligands: SF4.1 3 PLIP interactions: 3 interactions with chain A Hydrophobic interactions: A:W.294 Hydrogen bonds: A:S.37, A:E.55

1 x H2S: HYDROSULFURIC ACID(Non-covalent)

H2S.4: 3 residues within 4Å: Chain B: P.35, V.36 Ligands: SF4.3 No protein-ligand interaction detected (PLIP)

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Knauer, S.H. et al., Structural Basis for Reductive Radical Formation and Electron Recycling in (R)-2-Hydroxyisocaproyl-CoA Dehydratase. J.Am.Chem.Soc. (2011)

Release Date

2011-03-16

Peptides

alpha-subunit 2-hydroxyisocaproyl-CoA dehydratase: A
beta-subunit 2-hydroxyacyl-CoA dehydratase: B

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

alpha-subunit 2-hydroxyisocaproyl-CoA dehydratase

beta-subunit 2-hydroxyacyl-CoA dehydratase

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