SMTL ID : 3o4n.1

Crystal structure of the Rous Associated Virus Integrase catalytic domain in MES buffer pH 6.0

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.80 Å

Oligo State

homo-dimer

Ligands

1 x MES: 2-(N-MORPHOLINO)-ETHANESULFONIC ACID(Non-covalent)

MES.1: 8 residues within 4Å: Chain A: A.141, M.144, Y.145, F.150 Chain B: R.65, W.85, R.88, W.89 2 PLIP interactions: 2 interactions with chain B Water bridges: B:R.88 Salt bridges: B:R.88

3 x ZN: ZINC ION(Non-covalent)

ZN.2: 2 residues within 4Å: Chain A: D.15, D.72 5 PLIP interactions: 3 interactions with chain A, 2 Ligand-Water interactions Metal complexes: A:D.15, A:D.15, A:D.72, H2O.4, H2O.4 ZN.3: 2 residues within 4Å: Chain A: H.54 Chain B: H.54 4 PLIP interactions: 1 interactions with chain A, 1 interactions with chain B, 2 Ligand-Water interactions Metal complexes: A:H.54, B:H.54, H2O.2, H2O.2 ZN.4: 2 residues within 4Å: Chain B: D.15, D.72 4 PLIP interactions: 2 interactions with chain B, 2 Ligand-Water interactions Metal complexes: B:D.15, B:D.72, H2O.6, H2O.6

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Ballandras, A. et al., A crystal structure of the catalytic core domain of an avian sarcoma and leukemia virus integrase suggests an alternate dimeric assembly. Plos One (2011)

Release Date

2011-08-31

Peptides

integrase: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

integrase