SMTL ID : 3o6d.1

Pyridoxal phosphate biosynthetic protein PdxJ from Campylobacter jejuni in complex with pyridoxine-5'-phosphate

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.95 Å

Oligo State

homo-dimer

Ligands

2 x PXP: PYRIDOXINE-5'-PHOSPHATE(Non-covalent)

PXP.1: 13 residues within 4Å: Chain A: N.9, E.71, V.93, F.130, E.150, H.213, G.214, N.233, I.234, G.235, Q.236 Chain B: R.20 Ligands: PO4.2 15 PLIP interactions: 12 interactions with chain A, 3 interactions with chain B Hydrophobic interactions: A:V.93, A:F.130 Hydrogen bonds: A:H.213, A:G.214, A:G.235, A:Q.236, B:R.20 Water bridges: A:E.71, A:L.215, A:N.233, A:S.237, A:S.237, B:R.20 pi-Stacking: A:H.213 Salt bridges: B:R.20 PXP.4: 13 residues within 4Å: Chain A: R.20 Chain B: N.9, E.71, V.93, F.130, E.150, H.213, G.214, N.233, I.234, G.235, Q.236 Ligands: PO4.5 14 PLIP interactions: 11 interactions with chain B, 3 interactions with chain A Hydrophobic interactions: B:V.93, B:F.130 Hydrogen bonds: B:H.213, B:G.214, B:G.235, B:Q.236, A:R.20 Water bridges: B:L.215, B:N.233, B:S.237, B:S.237, A:R.20 pi-Stacking: B:H.213 Salt bridges: A:R.20

4 x PO4: PHOSPHATE ION(Non-functional Binders)

PO4.2: 5 residues within 4Å: Chain A: D.11, H.12, H.51 Chain B: R.20 Ligands: PXP.1 7 PLIP interactions: 5 interactions with chain A, 2 interactions with chain B Hydrogen bonds: A:D.11 Water bridges: A:H.44, A:H.44, B:R.20 Salt bridges: A:H.12, A:H.51, B:R.20 PO4.3: 5 residues within 4Å: Chain A: R.20, M.21, V.22 Chain B: N.158, L.174 4 PLIP interactions: 3 interactions with chain B, 1 interactions with chain A Hydrogen bonds: B:N.158, B:N.158, B:N.158 Water bridges: A:R.20 PO4.5: 5 residues within 4Å: Chain A: R.20 Chain B: D.11, H.12, H.51 Ligands: PXP.4 4 PLIP interactions: 2 interactions with chain B, 2 interactions with chain A Salt bridges: B:H.12, B:H.51, A:R.20 Water bridges: A:R.20 PO4.6: 5 residues within 4Å: Chain A: N.158, L.174 Chain B: R.20, M.21, V.22 4 PLIP interactions: 1 interactions with chain B, 3 interactions with chain A Water bridges: B:R.20 Hydrogen bonds: A:N.158, A:N.158, A:N.158

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Osipiuk, J. et al., X-ray crystal structure of pyridoxal phosphate biosynthetic protein PdxJ from Campylobacter jejuni. To be Published

Release Date

2010-08-11

Peptides

Pyridoxine 5'-phosphate synthase: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
A

Pyridoxine 5'-phosphate synthase

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