SMTL ID : 3o70.2 (1 other biounit)

PHD-type zinc finger of human PHD finger protein 13

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.85 Å

Oligo State

homo-dimer

Ligands

4 x GOL: GLYCEROL(Non-functional Binders)

GOL.1: 2 residues within 4Å: Chain A: R.51, K.52 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:R.51, A:R.51, A:K.52 Water bridges: A:R.51, A:S.53 GOL.2: 4 residues within 4Å: Chain A: P.32, M.33, L.45 Chain B: Y.15 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:M.33 GOL.5: 2 residues within 4Å: Chain B: R.51, K.52 5 PLIP interactions: 5 interactions with chain B Hydrogen bonds: B:R.51, B:R.51, B:K.52 Water bridges: B:R.51, B:S.53 GOL.6: 4 residues within 4Å: Chain A: Y.15 Chain B: P.32, M.33, L.45 2 PLIP interactions: 1 interactions with chain A, 1 interactions with chain B Hydrogen bonds: A:Y.15, B:M.33

4 x ZN: ZINC ION(Non-covalent)

ZN.3: 4 residues within 4Å: Chain A: C.22, C.24, H.44, C.47 4 PLIP interactions: 4 interactions with chain A Metal complexes: A:C.22, A:C.24, A:H.44, A:C.47 ZN.4: 4 residues within 4Å: Chain A: C.36, C.39, C.61, C.64 4 PLIP interactions: 4 interactions with chain A Metal complexes: A:C.36, A:C.39, A:C.61, A:C.64 ZN.7: 4 residues within 4Å: Chain B: C.22, C.24, H.44, C.47 4 PLIP interactions: 4 interactions with chain B Metal complexes: B:C.22, B:C.24, B:H.44, B:C.47 ZN.8: 4 residues within 4Å: Chain B: C.36, C.39, C.61, C.64 4 PLIP interactions: 4 interactions with chain B Metal complexes: B:C.36, B:C.39, B:C.61, B:C.64

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Chung, H.R. et al., PHF13 is a molecular reader and transcriptional co-regulator of H3K4me2/3. Elife (2016)

Release Date

2010-09-29

Peptides

PHD finger protein 13: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
A

PHD finger protein 13

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