SMTL ID : 3o7m.1

1.98 Angstrom resolution crystal structure of a hypoxanthine-guanine phosphoribosyltransferase (hpt-2) from Bacillus anthracis str. 'Ames Ancestor

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.98 Å

Oligo State

homo-tetramer

Ligands

2 x GOL: GLYCEROL(Non-functional Binders)

GOL.1: 7 residues within 4Å: Chain A: I.104, D.105, S.106, G.107, L.108, T.109, L.110 7 PLIP interactions: 7 interactions with chain A Hydrogen bonds: A:D.105, A:D.105, A:G.107, A:T.109, A:L.110 Water bridges: A:E.101, A:T.109 GOL.8: 9 residues within 4Å: Chain C: E.101, I.103, I.104, D.105, S.106, G.107, L.108, T.109, L.110 9 PLIP interactions: 9 interactions with chain C Hydrogen bonds: C:E.101, C:D.105, C:D.105, C:S.106, C:G.107, C:T.109, C:T.109, C:T.109, C:L.110

9 x SO4: SULFATE ION(Non-functional Binders)

SO4.2: 5 residues within 4Å: Chain A: L.44, K.45, G.46, D.161, R.167 6 PLIP interactions: 6 interactions with chain A Hydrogen bonds: A:K.45, A:G.46 Water bridges: A:D.102, A:D.161, A:R.167 Salt bridges: A:R.167 SO4.3: 3 residues within 4Å: Chain A: R.56, H.57, K.59 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:H.57 Salt bridges: A:H.57, A:K.59 SO4.5: 5 residues within 4Å: Chain B: L.44, K.45, G.46, D.161, R.167 7 PLIP interactions: 7 interactions with chain B Hydrogen bonds: B:L.44, B:K.45, B:G.46, B:D.161 Water bridges: B:D.161, B:D.161 Salt bridges: B:R.167 SO4.6: 7 residues within 4Å: Chain B: I.104, D.105, S.106, G.107, L.108, T.109, L.110 8 PLIP interactions: 8 interactions with chain B Hydrogen bonds: B:D.105, B:S.106, B:G.107, B:G.107, B:L.108, B:T.109, B:L.110 Water bridges: B:T.109 SO4.9: 6 residues within 4Å: Chain C: L.44, K.45, G.46, D.102, D.161, R.167 6 PLIP interactions: 6 interactions with chain C Hydrogen bonds: C:K.45, C:G.46 Water bridges: C:S.47, C:D.161, C:R.167 Salt bridges: C:R.167 SO4.11: 5 residues within 4Å: Chain D: L.44, K.45, G.46, D.161, R.167 7 PLIP interactions: 7 interactions with chain D Hydrogen bonds: D:K.45, D:G.46 Water bridges: D:D.102, D:E.164, D:E.164, D:R.167 Salt bridges: D:R.167 SO4.12: 2 residues within 4Å: Chain D: H.57, K.59 3 PLIP interactions: 3 interactions with chain D Hydrogen bonds: D:H.57 Salt bridges: D:H.57, D:K.59 SO4.13: 8 residues within 4Å: Chain D: E.101, I.104, D.105, S.106, G.107, L.108, T.109, L.110 9 PLIP interactions: 9 interactions with chain D Hydrogen bonds: D:I.103, D:D.105, D:S.106, D:S.106, D:G.107, D:L.108, D:T.109, D:T.109, D:L.110 SO4.14: 4 residues within 4Å: Chain D: D.105, K.133, R.136, F.154 7 PLIP interactions: 7 interactions with chain D Water bridges: D:K.133, D:K.133, D:K.133, D:R.136, D:R.136 Salt bridges: D:K.133, D:R.136

4 x BME: BETA-MERCAPTOETHANOL(Non-functional Binders)

BME.4: 4 residues within 4Å: Chain A: I.6, F.154, C.162, A.163 No protein-ligand interaction detected (PLIP) BME.7: 2 residues within 4Å: Chain B: F.154, C.162 No protein-ligand interaction detected (PLIP) BME.10: 3 residues within 4Å: Chain C: F.154, C.162, V.175 No protein-ligand interaction detected (PLIP) BME.15: 3 residues within 4Å: Chain D: F.154, C.162, V.175 No protein-ligand interaction detected (PLIP)

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Halavaty, A.S. et al., 1.98 Angstrom resolution crystal structure of a hypoxanthine-guanine phosphoribosyltransferase (hpt-2) from Bacillus anthracis str. 'Ames Ancestor. TO BE PUBLISHED

Release Date

2010-09-01

Peptides

Hypoxanthine phosphoribosyltransferase: ABCD

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
C

D
D

Hypoxanthine phosphoribosyltransferase

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