SMTL ID : 3o8e.1 (1 other biounit)

Structure of extracelllar portion of CD46 in complex with Adenovirus type 11 knob

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.84 Å

Oligo State

hetero-3-3-mer

Ligands

6 x NAG- NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG-NAG.1: 3 residues within 4Å: Chain B: D.47, R.48, N.49 No protein-ligand interaction detected (PLIP) NAG-NAG.2: 5 residues within 4Å: Chain B: N.80, G.86, Y.87, Q.88, I.104 1 PLIP interactions: 1 interactions with chain B Hydrophobic interactions: B:I.104 NAG-NAG.4: 3 residues within 4Å: Chain D: D.47, R.48, N.49 No protein-ligand interaction detected (PLIP) NAG-NAG.5: 5 residues within 4Å: Chain D: N.80, G.86, Y.87, Q.88, I.104 1 PLIP interactions: 1 interactions with chain D Hydrophobic interactions: D:I.104 NAG-NAG.7: 3 residues within 4Å: Chain F: D.47, R.48, N.49 No protein-ligand interaction detected (PLIP) NAG-NAG.8: 5 residues within 4Å: Chain F: N.80, G.86, Y.87, Q.88, I.104 1 PLIP interactions: 1 interactions with chain F Hydrophobic interactions: F:I.104

3 x DTD: DITHIANE DIOL(Non-covalent)

DTD.3: 4 residues within 4Å: Chain A: T.75, H.76, R.77, N.78 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:T.75 DTD.6: 4 residues within 4Å: Chain C: T.75, H.76, R.77, N.78 1 PLIP interactions: 1 interactions with chain C Hydrogen bonds: C:T.75 DTD.9: 4 residues within 4Å: Chain E: T.75, H.76, R.77, N.78 1 PLIP interactions: 1 interactions with chain E Hydrogen bonds: E:T.75

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Persson, B.D. et al., Structure of the extracellular portion of CD46 provides insights into its interactions with complement proteins and pathogens. Plos Pathog. (2010)

Release Date

2010-10-13

Peptides

Fiber 36.1 kDa protein: ACE
Membrane cofactor protein: BDF

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

C
A

E
A

B
B

D
B

F
B

Fiber 36.1 kDa protein

Membrane cofactor protein

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