SMTL ID : 3o8o.1 (1 other biounit)

Structure of phosphofructokinase from Saccharomyces cerevisiae

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.90 Å

Oligo State

hetero-2-2-mer

Ligands

4 x F6P: 6-O-phosphono-beta-D-fructofuranose(Non-covalent)

F6P.1: 10 residues within 4Å: Chain A: I.155, D.156, M.198, G.199, R.200, E.255, H.288, R.291 Chain B: R.190, R.282 10 PLIP interactions: 8 interactions with chain A, 2 interactions with chain B Hydrogen bonds: A:D.156, A:D.156, A:G.199, A:R.200, A:R.200, A:E.255, A:R.291 Salt bridges: A:H.288, B:R.190, B:R.282 F6P.3: 10 residues within 4Å: Chain A: R.191, K.282 Chain B: I.154, D.155, M.197, G.198, R.199, E.254, H.288, R.291 11 PLIP interactions: 9 interactions with chain B, 2 interactions with chain A Hydrogen bonds: B:D.155, B:D.155, B:G.198, B:R.199, B:R.199, B:E.254, B:R.291 Salt bridges: B:H.288, B:R.291, A:R.191, A:K.282 F6P.5: 10 residues within 4Å: Chain C: I.155, D.156, M.198, G.199, R.200, E.255, H.288, R.291 Chain D: R.190, R.282 10 PLIP interactions: 8 interactions with chain C, 2 interactions with chain D Hydrogen bonds: C:D.156, C:G.199, C:R.200, C:R.200, C:E.255, C:R.291 Salt bridges: C:H.288, C:R.291, D:R.190, D:R.282 F6P.7: 10 residues within 4Å: Chain C: R.191, K.282 Chain D: I.154, D.155, M.197, G.198, R.199, E.254, H.288, R.291 11 PLIP interactions: 9 interactions with chain D, 2 interactions with chain C Hydrogen bonds: D:D.155, D:D.155, D:G.198, D:R.199, D:R.199, D:E.254, D:R.291 Salt bridges: D:H.288, D:R.291, C:R.191, C:K.282

4 x FDP: 2,6-di-O-phosphono-beta-D-fructofuranose(Non-covalent)

FDP.2: 15 residues within 4Å: Chain A: A.403, R.465, T.522, V.523, S.524, N.526, Q.567, G.568, G.569, E.627, H.659, Q.662, R.752 Chain B: R.561, K.654 16 PLIP interactions: 14 interactions with chain A, 2 interactions with chain B Hydrogen bonds: A:R.465, A:T.522, A:S.524, A:S.524, A:N.526, A:Q.567, A:G.568, A:G.569, A:E.627, A:Q.662 Salt bridges: A:R.465, A:R.465, A:H.659, A:R.752, B:R.561, B:K.654 FDP.4: 14 residues within 4Å: Chain A: R.560, R.653 Chain B: A.403, R.465, T.523, L.524, S.525, N.527, Q.568, G.569, G.570, H.660, Q.663, R.742 15 PLIP interactions: 13 interactions with chain B, 2 interactions with chain A Hydrogen bonds: B:R.465, B:T.523, B:T.523, B:S.525, B:N.527, B:Q.568, B:G.569, B:G.570, B:Q.663 Salt bridges: B:R.465, B:R.465, B:H.660, B:R.742, A:R.560, A:R.653 FDP.6: 16 residues within 4Å: Chain C: A.403, R.465, E.494, T.522, V.523, S.524, N.526, Q.567, G.568, G.569, E.627, H.659, Q.662, R.752 Chain D: R.561, K.654 15 PLIP interactions: 13 interactions with chain C, 2 interactions with chain D Hydrogen bonds: C:R.465, C:T.522, C:T.522, C:S.524, C:S.524, C:N.526, C:Q.567, C:G.568, C:G.569 Salt bridges: C:R.465, C:R.465, C:H.659, C:R.752, D:R.561, D:K.654 FDP.8: 13 residues within 4Å: Chain C: R.560, R.653 Chain D: A.403, R.465, T.523, L.524, S.525, Q.568, G.569, G.570, H.660, Q.663, R.742 15 PLIP interactions: 13 interactions with chain D, 2 interactions with chain C Hydrogen bonds: D:R.465, D:T.523, D:S.525, D:S.525, D:S.525, D:Q.568, D:G.569, D:G.570, D:Q.663 Salt bridges: D:R.465, D:R.465, D:H.660, D:R.742, C:R.560, C:R.653

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Banaszak, K. et al., The Crystal Structures of Eukaryotic Phosphofructokinases from Baker's Yeast and Rabbit Skeletal Muscle. J.Mol.Biol. (2011)

Release Date

2011-02-02

Peptides

6-phosphofructokinase subunit alpha: AC
6-phosphofructokinase subunit beta: BD

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

C
C

B
B

D
D

6-phosphofructokinase subunit alpha

6-phosphofructokinase subunit beta

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