- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 2.00 Å
- Oligo State
- homo-tetramer
- Ligands
- 4 x RP6: 5-acetamido-2,6-anhydro-3,5-dideoxy-3-prop-2-en-1-yl-D-glycero-D-galacto-non-2-enonic acid(Non-covalent)
- 4 x CA: CALCIUM ION(Non-covalent)
CA.2: 6 residues within 4Å:- Chain A: D.212, G.216, D.242, G.263, Y.264, G.265
5 PLIP interactions:4 interactions with chain A, 1 Ligand-Water interactions- Metal complexes: A:D.212, A:G.216, A:D.242, A:Y.264, H2O.3
CA.5: 6 residues within 4Å:- Chain B: D.212, G.216, D.242, G.263, Y.264, G.265
5 PLIP interactions:4 interactions with chain B, 1 Ligand-Water interactions- Metal complexes: B:D.212, B:G.216, B:D.242, B:Y.264, H2O.15
CA.8: 6 residues within 4Å:- Chain C: D.212, G.216, D.242, G.263, Y.264, G.265
5 PLIP interactions:4 interactions with chain C, 1 Ligand-Water interactions- Metal complexes: C:D.212, C:G.216, C:D.242, C:Y.264, H2O.28
CA.11: 6 residues within 4Å:- Chain D: D.212, G.216, D.242, G.263, Y.264, G.265
5 PLIP interactions:4 interactions with chain D, 1 Ligand-Water interactions- Metal complexes: D:D.212, D:G.216, D:D.242, D:Y.264, H2O.40
- 4 x NDG: 2-acetamido-2-deoxy-alpha-D-glucopyranose(Non-covalent)
NDG.3: 2 residues within 4Å:- Chain A: N.64, T.66
3 PLIP interactions:3 interactions with chain A- Hydrogen bonds: A:N.64, A:N.64, A:T.66
NDG.6: 2 residues within 4Å:- Chain B: N.64, T.66
3 PLIP interactions:3 interactions with chain B- Hydrogen bonds: B:N.64, B:N.64, B:T.66
NDG.9: 2 residues within 4Å:- Chain C: N.64, T.66
3 PLIP interactions:3 interactions with chain C- Hydrogen bonds: C:N.64, C:N.64, C:T.66
NDG.12: 2 residues within 4Å:- Chain D: N.64, T.66
3 PLIP interactions:3 interactions with chain D- Hydrogen bonds: D:N.64, D:N.64, D:T.66
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Rudrawar, S. et al., Novel sialic acid derivatives lock open the 150-loop of an influenza A virus group-1 sialidase. Nat Commun (2010)
- Release Date
- 2010-12-15
- Peptides
- Neuraminidase: ABCD
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
AC
AD
A
- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 2.00 Å
- Oligo State
- homo-tetramer
- Ligands
- 4 x RP6: 5-acetamido-2,6-anhydro-3,5-dideoxy-3-prop-2-en-1-yl-D-glycero-D-galacto-non-2-enonic acid(Non-covalent)
- 4 x CA: CALCIUM ION(Non-covalent)
- 4 x NDG: 2-acetamido-2-deoxy-alpha-D-glucopyranose(Non-covalent)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Rudrawar, S. et al., Novel sialic acid derivatives lock open the 150-loop of an influenza A virus group-1 sialidase. Nat Commun (2010)
- Release Date
- 2010-12-15
- Peptides
- Neuraminidase: ABCD
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
AC
AD
A