SMTL ID : 3o9k.1

Influenza NA in complex with compound 6

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.49 Å

Oligo State

homo-tetramer

Ligands

4 x ETT: 5-acetamido-2,6-anhydro-3,5-dideoxy-3-[(2E)-3-(4-methylphenyl)prop-2-en-1-yl]-D-glycero-D-galacto-non-2-enonic acid(Non-covalent)

ETT.1: 13 residues within 4Å: Chain A: R.36, D.69, R.70, W.97, R.143, A.165, E.195, E.196, R.211, N.213, Y.264, R.288, Y.322 8 PLIP interactions: 8 interactions with chain A Hydrophobic interactions: A:W.97 Hydrogen bonds: A:R.36, A:R.70, A:E.195, A:R.211, A:Y.322 Salt bridges: A:R.211, A:R.288 ETT.2: 13 residues within 4Å: Chain B: R.36, D.69, R.70, W.97, R.143, A.165, E.195, E.196, R.211, N.213, Y.264, R.288, Y.322 8 PLIP interactions: 8 interactions with chain B Hydrophobic interactions: B:W.97 Hydrogen bonds: B:R.36, B:R.70, B:E.195, B:R.211, B:Y.322 Salt bridges: B:R.211, B:R.288 ETT.3: 13 residues within 4Å: Chain C: R.36, D.69, R.70, W.97, R.143, A.165, E.195, E.196, R.211, N.213, Y.264, R.288, Y.322 8 PLIP interactions: 8 interactions with chain C Hydrophobic interactions: C:W.97 Hydrogen bonds: C:R.36, C:R.70, C:E.195, C:R.211, C:Y.322 Salt bridges: C:R.211, C:R.288 ETT.4: 13 residues within 4Å: Chain D: R.36, D.69, R.70, W.97, R.143, A.165, E.195, E.196, R.211, N.213, Y.264, R.288, Y.322 8 PLIP interactions: 8 interactions with chain D Hydrophobic interactions: D:W.97 Hydrogen bonds: D:R.36, D:R.70, D:E.195, D:R.211, D:Y.322 Salt bridges: D:R.211, D:R.288

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Rudrawar, S. et al., Novel sialic acid derivatives lock open the 150-loop of an influenza A virus group-1 sialidase. Nat Commun (2010)

Release Date

2010-12-15

Peptides

Neuraminidase: ABCD

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
A

C
A

D
A

Neuraminidase

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