SMTL ID : 3oa2.1

Crystal structure of the WlbA (WbpB) dehydrogenase from Pseudomonas aeruginosa in complex with NAD at 1.5 angstrom resolution

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.50 Å

Oligo State

homo-tetramer

Ligands

4 x NAD: NICOTINAMIDE-ADENINE-DINUCLEOTIDE(Non-covalent)

NAD.1: 27 residues within 4Å: Chain A: I.9, G.10, A.12, G.13, Y.14, I.15, Y.34, D.35, I.36, N.37, C.80, S.81, P.82, N.83, L.85, H.86, H.89, E.103, K.104, P.105, Q.132, W.173, K.174, N.186, H.268 Chain B: E.57 Chain C: S.39 21 PLIP interactions: 16 interactions with chain A, 4 interactions with chain C, 1 interactions with chain B Hydrophobic interactions: A:I.15 Hydrogen bonds: A:G.10, A:A.12, A:Y.14, A:I.15, A:I.36, A:N.37, A:S.81, A:E.103, A:Q.132, A:N.186, C:S.39, B:E.57 Water bridges: A:G.13, A:A.16, A:Y.34, C:N.37, C:N.37, C:S.39 Salt bridges: A:K.174, A:K.174 NAD.2: 27 residues within 4Å: Chain A: E.57 Chain B: I.9, G.10, A.12, G.13, Y.14, I.15, Y.34, D.35, I.36, N.37, C.80, S.81, P.82, N.83, L.85, H.86, H.89, E.103, K.104, P.105, Q.132, W.173, K.174, N.186, H.268 Chain D: S.39 21 PLIP interactions: 2 interactions with chain D, 1 interactions with chain A, 18 interactions with chain B Hydrogen bonds: D:S.39, A:E.57, B:G.10, B:A.12, B:Y.14, B:I.15, B:Y.34, B:I.36, B:N.37, B:S.81, B:Q.132, B:Q.132, B:N.186 Water bridges: D:S.39, B:G.13, B:A.16, B:N.37, B:Y.84 Hydrophobic interactions: B:I.15 Salt bridges: B:K.174, B:K.174 NAD.3: 28 residues within 4Å: Chain A: S.39 Chain C: I.9, G.10, A.12, G.13, Y.14, I.15, Y.34, D.35, I.36, N.37, C.80, S.81, P.82, N.83, L.85, H.86, H.89, E.103, K.104, P.105, I.130, Q.132, W.173, K.174, N.186, H.268 Chain D: E.57 20 PLIP interactions: 17 interactions with chain C, 2 interactions with chain A, 1 interactions with chain D Hydrophobic interactions: C:I.15 Hydrogen bonds: C:G.10, C:A.12, C:Y.14, C:I.15, C:Y.34, C:I.36, C:S.81, C:E.103, C:Q.132, C:N.186, A:S.39, D:E.57 Water bridges: C:G.13, C:A.16, C:N.37, A:S.39 Salt bridges: C:K.174, C:K.174 pi-Cation interactions: C:K.104 NAD.4: 27 residues within 4Å: Chain B: S.39 Chain C: E.57 Chain D: I.9, G.10, A.12, G.13, Y.14, I.15, Y.34, D.35, I.36, N.37, C.80, S.81, P.82, N.83, L.85, H.86, H.89, E.103, K.104, P.105, Q.132, W.173, K.174, N.186, H.268 25 PLIP interactions: 19 interactions with chain D, 2 interactions with chain C, 4 interactions with chain B Hydrophobic interactions: D:I.15 Hydrogen bonds: D:G.10, D:A.12, D:Y.14, D:I.15, D:I.36, D:N.37, D:N.37, D:S.81, D:Q.132, D:Q.132, D:N.186, C:E.57, C:E.57, B:S.39 Water bridges: D:G.13, D:A.16, D:Y.34, D:K.104, D:K.174, B:N.37, B:N.37, B:S.39 Salt bridges: D:K.174, D:K.174

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Thoden, J.B. et al., Structural and Functional Studies of WlbA: A Dehydrogenase Involved in the Biosynthesis of 2,3-Diacetamido-2,3-dideoxy-d-mannuronic Acid . Biochemistry (2010)

Release Date

2010-08-18

Peptides

WbpB: ABCD

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
C

D
D

WbpB