SMTL ID : 3oah.2 (5 other biounits)

Structural Characterization of the Dual Glycan Binding Adeno-Associated Virus Serotype 6

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 3.00 Å

Oligo State

monomer

Ligands

1 x CYT: 6-AMINOPYRIMIDIN-2(1H)-ONE(Non-covalent)

CYT.1: 3 residues within 4Å: Chain A: G.425, H.426, F.427 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:H.426, A:H.426, A:H.426, A:H.428

1 x OAH: 9-(2-deoxy-5-O-phosphono-alpha-D-threo-pentofuranosyl)-9H-purin-6-amine(Non-covalent)

OAH.2: 8 residues within 4Å: Chain A: E.215, V.217, D.407, H.426, H.428, S.430, G.437, K.439 8 PLIP interactions: 8 interactions with chain A Hydrogen bonds: A:E.215, A:D.407, A:G.437, A:K.439 Water bridges: A:S.430 Salt bridges: A:H.426, A:K.439 pi-Stacking: A:H.428

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Ng, R. et al., Structural characterization of the dual glycan binding adeno-associated virus serotype 6. J.Virol. (2010)

Release Date

2011-03-23

Peptides

Capsid protein VP1: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Capsid protein VP1

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