SMTL ID : 3obz.1

Crystal structure of human phytanoyl-COA dioxygenase phyhd1 2-oxoglutarate and iron complex

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.15 Å

Oligo State

monomer

Ligands

1 x AKG: 2-OXOGLUTARIC ACID(Non-covalent)

AKG.1: 13 residues within 4Å: Chain A: I.143, K.145, V.153, H.156, D.158, W.174, L.187, H.246, S.248, R.257, T.261, H.263 Ligands: FE2.2 10 PLIP interactions: 10 interactions with chain A Hydrophobic interactions: A:I.143, A:V.153, A:L.187 Hydrogen bonds: A:S.248, A:S.248, A:T.261 Salt bridges: A:K.145, A:H.246, A:R.257, A:H.263

1 x FE2: FE (II) ION(Non-covalent)

FE2.2: 4 residues within 4Å: Chain A: H.156, D.158, H.246 Ligands: AKG.1 4 PLIP interactions: 3 interactions with chain A, 1 Ligand-Water interactions Metal complexes: A:H.156, A:D.158, A:H.246, H2O.7

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Zhang, Z. et al., Crystal Structure of Human PHYHD1, a Non-Heme Fe(II) and 2-Oxoglutarate Dependent Oxygenase Related to Phytanoyl-CoA Hydroxylase. To be Published

Release Date

2010-09-01

Peptides

Phytanoyl-CoA dioxygenase domain-containing protein 1: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Phytanoyl-CoA dioxygenase domain-containing protein 1

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