SMTL ID : 3oc4.1

Crystal Structure of a pyridine nucleotide-disulfide family oxidoreductase from the Enterococcus faecalis V583

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.60 Å

Oligo State

homo-dimer

Ligands

2 x FAD: FLAVIN-ADENINE DINUCLEOTIDE(Non-covalent)

FAD.1: 26 residues within 4Å: Chain A: G.9, S.11, F.12, A.13, D.34, K.35, Q.36, R.79, E.80, V.81, A.110, T.111, G.112, Y.131, K.132, I.158, E.161, Y.248, G.278, D.279, P.295, L.296, V.297, A.300 Chain B: Y.420, P.422 25 PLIP interactions: 22 interactions with chain A, 3 interactions with chain B Hydrophobic interactions: A:Y.131, A:K.132, A:I.158, A:I.158, A:I.158 Hydrogen bonds: A:S.11, A:A.13, A:K.35, A:V.81, A:V.81, A:K.132, A:D.279, A:D.279, A:P.295, A:V.297, B:Y.420 Water bridges: A:S.11, A:G.14, A:T.111, A:T.111, A:L.296, B:Y.420, B:Y.420 Salt bridges: A:K.132 pi-Cation interactions: A:K.35 FAD.3: 31 residues within 4Å: Chain A: Y.420, Q.421, P.422 Chain B: I.8, G.9, S.11, F.12, A.13, D.34, K.35, Q.36, G.44, R.79, E.80, V.81, A.110, T.111, G.112, A.113, Y.131, K.132, I.158, E.161, Y.248, G.278, D.279, P.295, L.296, V.297, N.298, A.300 22 PLIP interactions: 20 interactions with chain B, 2 interactions with chain A Hydrophobic interactions: B:Y.131, B:K.132, B:I.158 Hydrogen bonds: B:S.11, B:A.13, B:K.35, B:Q.36, B:V.81, B:V.81, B:G.112, B:A.113, B:K.132, B:K.132, B:D.279, B:P.295, B:V.297, B:N.298, A:Y.420 Water bridges: B:L.296, B:N.298, A:Y.420 pi-Cation interactions: B:K.35

2 x NA: SODIUM ION(Non-functional Binders)

NA.2: 3 residues within 4Å: Chain A: G.344, F.347, Q.349 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:F.347, A:F.347 NA.4: 5 residues within 4Å: Chain B: G.344, L.345, F.347, P.348, Q.349 2 PLIP interactions: 2 interactions with chain B Hydrogen bonds: B:G.344, B:F.347

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Kumaran, D. et al., Crystal Structure of a pyridine nucleotide-disulfide family oxidoreductase from the Enterococcus faecalis V583. To be Published

Release Date

2010-10-06

Peptides

Oxidoreductase, pyridine nucleotide-disulfide family: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Oxidoreductase, pyridine nucleotide-disulfide family