SMTL ID : 3ocf.1

Crystal structure of fumarate lyase:delta crystallin from Brucella melitensis in native form

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.10 Å

Oligo State

homo-tetramer

Ligands

4 x CL: CHLORIDE ION(Non-functional Binders)

CL.1: 4 residues within 4Å: Chain A: I.62, P.63, A.64, R.394 Ligand excluded by PLIP CL.4: 4 residues within 4Å: Chain B: I.62, P.63, A.64, R.394 Ligand excluded by PLIP CL.6: 3 residues within 4Å: Chain C: I.62, P.63, A.64 Ligand excluded by PLIP CL.7: 4 residues within 4Å: Chain D: I.62, P.63, A.64, R.394 Ligand excluded by PLIP

5 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.2: 8 residues within 4Å: Chain A: Q.359, N.363, Y.387, N.388, S.391, L.395 Chain C: Q.359 Ligands: EDO.3 3 PLIP interactions: 1 interactions with chain A, 2 interactions with chain C Hydrogen bonds: A:N.363, C:Q.359, C:Q.359 EDO.3: 8 residues within 4Å: Chain A: Q.359 Chain C: Q.359, N.363, Y.387, N.388, S.391, L.395 Ligands: EDO.2 3 PLIP interactions: 2 interactions with chain A, 1 interactions with chain C Hydrogen bonds: A:Q.359, A:Q.359, C:N.363 EDO.5: 8 residues within 4Å: Chain B: Q.359, N.363, Y.387, N.388, S.391, L.395 Chain D: Q.359 Ligands: EDO.9 3 PLIP interactions: 2 interactions with chain D, 1 interactions with chain B Hydrogen bonds: D:Q.359, D:Q.359, B:N.363 EDO.8: 2 residues within 4Å: Chain D: G.31, E.32 1 PLIP interactions: 1 interactions with chain D Hydrogen bonds: D:E.32 EDO.9: 7 residues within 4Å: Chain B: Q.359 Chain D: N.363, Y.387, N.388, S.391, L.395 Ligands: EDO.5 5 PLIP interactions: 3 interactions with chain D, 2 interactions with chain B Hydrogen bonds: D:N.363, D:S.391, D:S.391, B:Q.359, B:Q.359

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Edwards, T.E. et al., Crystal structure of fumarate lyase:delta crystallin from Brucella melitensis in native form. To be Published

Release Date

2010-08-18

Peptides

Fumarate lyase:Delta crystallin: ABCD

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
C

D
D

Fumarate lyase:Delta crystallin