SMTL ID : 3odp.1

Crystal structure of a putative tagatose-6-phosphate ketose/aldose isomerase (NT01CX_0292) from CLOSTRIDIUM NOVYI NT at 2.35 A resolution

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.35 Å

Oligo State

homo-dimer

Ligands

4 x PG4: TETRAETHYLENE GLYCOL(Non-functional Binders)

PG4.1: 8 residues within 4Å: Chain A: K.105, E.108 Chain B: N.81, A.82, K.83, E.84, N.85 Ligands: PG4.2 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:N.58, A:K.105 PG4.2: 11 residues within 4Å: Chain A: K.60, K.87, E.89, F.101, Y.102, Y.103, L.104, K.105 Chain B: N.81, A.82 Ligands: PG4.1 4 PLIP interactions: 3 interactions with chain A, 1 interactions with chain B Hydrogen bonds: A:E.89, B:N.81 Water bridges: A:K.60, A:K.87 PG4.4: 8 residues within 4Å: Chain A: N.81, A.82, K.83, E.84, N.85 Chain B: K.105, E.108 Ligands: PG4.5 2 PLIP interactions: 2 interactions with chain B Hydrogen bonds: B:N.58, B:K.105 PG4.5: 11 residues within 4Å: Chain A: N.81, A.82 Chain B: K.60, K.87, E.89, F.101, Y.102, Y.103, L.104, K.105 Ligands: PG4.4 4 PLIP interactions: 3 interactions with chain B, 1 interactions with chain A Hydrogen bonds: B:E.89, A:N.81 Water bridges: B:K.60, B:K.87

2 x PO4: PHOSPHATE ION(Non-functional Binders)

PO4.3: 7 residues within 4Å: Chain A: S.69, A.116, R.117, S.118, G.119, S.121, M.177 7 PLIP interactions: 7 interactions with chain A Hydrogen bonds: A:S.69, A:R.117, A:S.118, A:S.118, A:G.119, A:S.121, A:S.121 PO4.6: 7 residues within 4Å: Chain B: S.69, A.116, R.117, S.118, G.119, S.121, M.177 7 PLIP interactions: 7 interactions with chain B Hydrogen bonds: B:S.69, B:R.117, B:S.118, B:S.118, B:G.119, B:S.121, B:S.121

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Joint Center for Structural Genomics (JCSG), Crystal structure of a putative tagatose-6-phosphate ketose/aldose isomerase (NT01CX_0292) from CLOSTRIDIUM NOVYI NT at 2.35 A resolution. To be published

Release Date

2010-12-01

Peptides

putative tagatose-6-phosphate ketose/aldose isomerase: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
A

putative tagatose-6-phosphate ketose/aldose isomerase