- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 2.50 Å
- Oligo State
- homo-dimer
- Ligands
- 2 x ITD: (6,6-dimethyl-5,6-dihydroimidazo[2,1-b][1,3]thiazol-3-yl)methyl N,N'-dicyclohexylimidothiocarbamate(Non-covalent)
- 5 x OLC: (2R)-2,3-dihydroxypropyl (9Z)-octadec-9-enoate(Non-covalent)
OLC.2: 3 residues within 4Å:- Chain A: F.114, F.117, L.118
1 PLIP interactions:1 interactions with chain A- Water bridges: A:L.118
OLC.3: 13 residues within 4Å:- Chain A: V.207, Q.210, F.211, I.214, I.219, I.433, D.436, S.437, L.440, H.455, I.458
- Chain B: V.208
- Ligands: ITD.1
10 PLIP interactions:9 interactions with chain A, 1 interactions with chain B- Hydrophobic interactions: A:V.207, A:Q.210, A:F.211, A:F.211, A:I.214, A:I.214, A:I.219, A:D.436, B:V.208
- Hydrogen bonds: A:H.455
OLC.4: 11 residues within 4Å:- Chain A: L.130, V.134, H.213, I.214, G.217, L.218, I.219, F.422, Y.430, I.433, S.434
6 PLIP interactions:6 interactions with chain A- Hydrophobic interactions: A:I.219, A:Y.430, A:Y.430, A:I.433
- Hydrogen bonds: A:L.130, A:G.217
OLC.7: 9 residues within 4Å:- Chain B: T.61, L.68, V.69, V.72, C.470, P.473, I.474, Y.476, A.477
3 PLIP interactions:3 interactions with chain B- Hydrophobic interactions: B:L.68, B:P.473, B:I.474
OLC.8: 1 residues within 4Å:- Chain B: I.444
No protein-ligand interaction detected (PLIP)- 6 x OLA: OLEIC ACID(Non-covalent)
OLA.5: 4 residues within 4Å:- Chain A: V.106, V.109, A.110, Y.113
4 PLIP interactions:4 interactions with chain A- Hydrophobic interactions: A:V.106, A:V.109, A:A.110
- Hydrogen bonds: A:Y.113
OLA.9: 9 residues within 4Å:- Chain B: I.49, P.52, T.53, S.56, A.105, V.106, V.109, A.110, Y.113
7 PLIP interactions:7 interactions with chain B- Hydrophobic interactions: B:I.49, B:P.52, B:A.105, B:V.106, B:V.109, B:A.110, B:Y.113
OLA.10: 9 residues within 4Å:- Chain A: V.208
- Chain B: V.206, Q.210, F.211, I.214, I.219, D.436, S.437, L.440
8 PLIP interactions:6 interactions with chain B, 2 interactions with chain A- Hydrophobic interactions: B:V.206, B:Q.210, B:F.211, B:I.214, B:I.219, B:L.440, A:V.208, A:V.208
OLA.11: 8 residues within 4Å:- Chain B: R.80, L.88, H.89, V.92, L.96, Y.167, W.171, L.175
10 PLIP interactions:10 interactions with chain B- Hydrophobic interactions: B:L.88, B:V.92, B:L.96, B:Y.167, B:W.171, B:W.171, B:L.175
- Hydrogen bonds: B:Y.167
- Salt bridges: B:R.80, B:H.89
OLA.12: 4 residues within 4Å:- Chain B: A.421, A.424, C.425, L.464
No protein-ligand interaction detected (PLIP)OLA.13: 7 residues within 4Å:- Chain B: L.130, I.214, L.218, F.422, W.426, Y.430, S.434
7 PLIP interactions:7 interactions with chain B- Hydrophobic interactions: B:L.130, B:L.218, B:W.426, B:Y.430, B:Y.430
- Hydrogen bonds: B:Y.430
- Water bridges: B:S.133
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Wu, B. et al., Structures of the CXCR4 chemokine GPCR with small-molecule and cyclic peptide antagonists. Science (2010)
- Release Date
- 2010-10-27
- Peptides
- C-X-C chemokine receptor type 4, Lysozyme Chimera: AB
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
B - Membrane
-
We predict this structure to be a membrane protein.
- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 2.50 Å
- Oligo State
- homo-dimer
- Ligands
- 2 x ITD: (6,6-dimethyl-5,6-dihydroimidazo[2,1-b][1,3]thiazol-3-yl)methyl N,N'-dicyclohexylimidothiocarbamate(Non-covalent)
- 5 x OLC: (2R)-2,3-dihydroxypropyl (9Z)-octadec-9-enoate(Non-covalent)
- 6 x OLA: OLEIC ACID(Non-covalent)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Wu, B. et al., Structures of the CXCR4 chemokine GPCR with small-molecule and cyclic peptide antagonists. Science (2010)
- Release Date
- 2010-10-27
- Peptides
- C-X-C chemokine receptor type 4, Lysozyme Chimera: AB
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
B - Membrane
-
We predict this structure to be a membrane protein.