SMTL ID : 3oe9.1

Crystal structure of the chemokine CXCR4 receptor in complex with a small molecule antagonist IT1t in P1 spacegroup

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 3.10 Å

Oligo State

homo-dimer

Ligands

2 x ITD: (6,6-dimethyl-5,6-dihydroimidazo[2,1-b][1,3]thiazol-3-yl)methyl N,N'-dicyclohexylimidothiocarbamate(Non-covalent)

ITD.1: 13 residues within 4Å: Chain A: K.48, W.104, D.107, A.108, W.112, V.122, H.123, Y.126, R.193, C.196, D.197, R.198, E.459 5 PLIP interactions: 5 interactions with chain A Hydrophobic interactions: A:K.48, A:W.104, A:W.112, A:V.122 Hydrogen bonds: A:D.107 ITD.2: 11 residues within 4Å: Chain B: W.104, D.107, V.122, H.123, Y.126, R.193, I.195, C.196, D.197, R.198, E.459 5 PLIP interactions: 5 interactions with chain B Hydrophobic interactions: B:W.104, B:W.104, B:V.122, B:I.195 Hydrogen bonds: B:D.107

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Wu, B. et al., Structures of the CXCR4 chemokine GPCR with small-molecule and cyclic peptide antagonists. Science (2010)

Release Date

2010-10-27

Peptides

C-X-C chemokine receptor type 4, Lysozyme Chimera: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Membrane

We predict this structure to be a membrane protein.
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C-X-C chemokine receptor type 4, Lysozyme Chimera

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