SMTL ID : 3oem.1

Crystal structure of GluN2D ligand-binding core in complex with N-methyl-D-aspartate

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.90 Å

Oligo State

monomer

Ligands

1 x OEM: N-methyl-D-aspartic acid(Non-covalent)

OEM.1: 12 residues within 4Å: Chain A: E.14, H.88, S.114, L.115, T.116, R.121, G.172, S.173, T.174, Y.214, D.215, Y.245 15 PLIP interactions: 15 interactions with chain A Hydrophobic interactions: A:Y.214 Hydrogen bonds: A:S.114, A:T.116, A:T.116, A:S.173, A:T.174, A:T.174 Water bridges: A:T.134, A:V.169, A:V.169, A:S.173, A:E.175, A:Y.214 Salt bridges: A:H.88, A:R.121

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Vance, K.M. et al., Ligand-specific deactivation time course of GluN1/GluN2D NMDA receptors. Nat Commun (2011)

Release Date

2011-05-11

Peptides

Glutamate [NMDA] receptor subunit epsilon-4: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Glutamate [NMDA] receptor subunit epsilon-4

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