SMTL ID : 3ofk.3 (3 other biounits)

Crystal structure of N-methyltransferase NodS from Bradyrhizobium japonicum WM9 in complex with S-adenosyl-l-homocysteine (SAH)

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.85 Å

Oligo State

monomer

Ligands

1 x SAH: S-ADENOSYL-L-HOMOCYSTEINE(Non-covalent)

SAH.1: 19 residues within 4Å: Chain A: L.17, W.27, L.29, R.38, H.39, G.59, C.60, A.61, D.80, V.81, M.82, A.85, D.105, I.106, A.121, E.122, V.123, Y.126, L.127 12 PLIP interactions: 12 interactions with chain A Hydrophobic interactions: A:A.61 Hydrogen bonds: A:C.60, A:A.61, A:V.81, A:D.105, A:D.105, A:I.106, A:A.121 Water bridges: A:H.39, A:A.121 Salt bridges: A:R.38, A:H.39

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Cakici, O. et al., Crystal Structures of NodS N-Methyltransferase from Bradyrhizobium japonicum in Ligand-Free Form and as SAH Complex. J.Mol.Biol. (2010)

Release Date

2010-10-27

Peptides

Nodulation protein S: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
C

Nodulation protein S

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