SMTL ID : 3ogk.1

Structure of COI1-ASK1 in complex with coronatine and an incomplete JAZ1 degron

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.80 Å

Oligo State

hetero-8-8-7-mer

Ligands

8 x OGK: (1S,2S)-2-ethyl-1-({[(3aS,4S,6R,7aS)-6-ethyl-1-oxooctahydro-1H-inden-4-yl]carbonyl}amino)cyclopropanecarboxylic acid(Non-covalent)

OGK.1: 14 residues within 4Å: Chain B: R.85, A.86, F.89, R.348, A.384, V.385, Y.386, R.409, V.411, Y.444, L.469, R.496, W.519 Ligands: PO4.2 20 PLIP interactions: 20 interactions with chain B Hydrophobic interactions: B:A.86, B:F.89, B:F.89, B:F.89, B:F.89, B:F.89, B:A.384, B:Y.386, B:R.409, B:V.411, B:Y.444, B:L.469, B:L.469 Hydrogen bonds: B:R.85, B:R.85, B:Y.386, B:R.496 Salt bridges: B:R.85, B:R.348, B:R.409 OGK.6: 16 residues within 4Å: Chain E: R.85, A.86, F.89, R.348, A.384, V.385, Y.386, R.409, V.411, Y.444, L.469, R.496, W.519 Chain F: R.1, R.2 Ligands: PO4.7 21 PLIP interactions: 20 interactions with chain E, 1 interactions with chain F Hydrophobic interactions: E:A.86, E:F.89, E:F.89, E:F.89, E:F.89, E:F.89, E:A.384, E:Y.386, E:R.409, E:V.411, E:Y.444, E:L.469 Hydrogen bonds: E:R.85, E:R.85, E:Y.386, E:Y.386, E:R.496, F:R.2 Salt bridges: E:R.85, E:R.348, E:R.409 OGK.11: 14 residues within 4Å: Chain H: R.85, A.86, F.89, L.91, R.348, V.385, Y.386, R.409, V.411, Y.444, L.469, R.496, W.519 Ligands: PO4.12 18 PLIP interactions: 18 interactions with chain H Hydrophobic interactions: H:A.86, H:F.89, H:F.89, H:F.89, H:F.89, H:F.89, H:L.91, H:Y.386, H:Y.444, H:L.469, H:W.519 Hydrogen bonds: H:R.85, H:R.85, H:Y.386, H:Y.386 Salt bridges: H:R.85, H:R.348, H:R.409 OGK.16: 13 residues within 4Å: Chain K: R.85, A.86, F.89, L.91, R.348, V.385, Y.386, R.409, V.411, Y.444, L.469, R.496, W.519 17 PLIP interactions: 17 interactions with chain K Hydrophobic interactions: K:A.86, K:F.89, K:F.89, K:F.89, K:F.89, K:L.91, K:Y.386, K:R.409, K:V.411, K:L.469, K:W.519 Hydrogen bonds: K:R.85, K:Y.386, K:R.496 Salt bridges: K:R.85, K:R.348, K:R.409 OGK.21: 16 residues within 4Å: Chain M: R.85, A.86, F.89, L.91, R.348, A.384, V.385, Y.386, R.409, V.411, Y.444, L.469, R.496, W.519 Chain N: R.1 Ligands: PO4.22 21 PLIP interactions: 20 interactions with chain M, 1 interactions with chain N Hydrophobic interactions: M:A.86, M:F.89, M:F.89, M:F.89, M:F.89, M:F.89, M:L.91, M:A.384, M:Y.386, M:V.411, M:Y.444, M:L.469, M:W.519 Hydrogen bonds: M:R.85, M:R.85, M:Y.386, M:R.496, N:R.1 Salt bridges: M:R.85, M:R.348, M:R.409 OGK.26: 14 residues within 4Å: Chain P: R.85, A.86, F.89, R.348, A.384, V.385, Y.386, R.409, V.411, Y.444, L.469, R.496, W.519 Ligands: PO4.27 20 PLIP interactions: 20 interactions with chain P Hydrophobic interactions: P:A.86, P:F.89, P:F.89, P:F.89, P:F.89, P:F.89, P:A.384, P:Y.386, P:R.409, P:V.411, P:Y.444, P:L.469, P:L.469 Hydrogen bonds: P:R.85, P:R.85, P:Y.386, P:R.496 Salt bridges: P:R.85, P:R.348, P:R.409 OGK.31: 13 residues within 4Å: Chain S: R.85, A.86, F.89, R.348, V.385, Y.386, R.409, V.411, Y.444, L.469, R.496, W.519 Ligands: PO4.32 18 PLIP interactions: 17 interactions with chain S, 1 interactions with chain T Hydrophobic interactions: S:A.86, S:F.89, S:F.89, S:F.89, S:F.89, S:F.89, S:Y.386, S:Y.444, S:L.469, S:L.469 Hydrogen bonds: S:R.85, S:R.85, S:Y.386, S:R.496, T:R.1 Salt bridges: S:R.85, S:R.348, S:R.409 OGK.36: 15 residues within 4Å: Chain V: R.85, A.86, F.89, L.91, R.348, A.384, V.385, Y.386, R.409, V.411, Y.444, L.469, R.496, W.519 Ligands: PO4.37 21 PLIP interactions: 20 interactions with chain V, 1 interactions with chain W Hydrophobic interactions: V:A.86, V:F.89, V:F.89, V:F.89, V:F.89, V:F.89, V:L.91, V:A.384, V:Y.386, V:V.411, V:Y.444, V:L.469, V:W.519 Hydrogen bonds: V:R.85, V:R.85, V:Y.386, V:Y.386, W:R.2 Salt bridges: V:R.85, V:R.348, V:R.409

32 x PO4: PHOSPHATE ION(Non-functional Binders)

PO4.2: 8 residues within 4Å: Chain B: R.85, M.88, R.120, R.409 Chain C: R.2 Ligands: OGK.1, PO4.3, PO4.4 Ligand excluded by PLIP PO4.3: 4 residues within 4Å: Chain B: R.120, K.147 Chain C: R.2 Ligands: PO4.2 Ligand excluded by PLIP PO4.4: 7 residues within 4Å: Chain B: K.81, R.85, R.120, R.121, R.440, K.492 Ligands: PO4.2 Ligand excluded by PLIP PO4.5: 4 residues within 4Å: Chain B: H.54, K.79, H.118, K.144 Ligand excluded by PLIP PO4.7: 7 residues within 4Å: Chain E: R.85, M.88, R.120, R.409 Ligands: OGK.6, PO4.8, PO4.9 Ligand excluded by PLIP PO4.8: 4 residues within 4Å: Chain E: R.120, K.147 Chain F: R.2 Ligands: PO4.7 Ligand excluded by PLIP PO4.9: 7 residues within 4Å: Chain E: K.81, R.85, R.120, R.121, R.440, K.492 Ligands: PO4.7 Ligand excluded by PLIP PO4.10: 4 residues within 4Å: Chain E: H.54, K.79, H.118, K.144 Ligand excluded by PLIP PO4.12: 8 residues within 4Å: Chain H: R.85, M.88, R.120, R.409 Chain I: R.2 Ligands: OGK.11, PO4.13, PO4.14 Ligand excluded by PLIP PO4.13: 4 residues within 4Å: Chain H: R.120, K.147 Chain I: R.2 Ligands: PO4.12 Ligand excluded by PLIP PO4.14: 7 residues within 4Å: Chain H: K.81, R.85, R.120, R.121, R.440, K.492 Ligands: PO4.12 Ligand excluded by PLIP PO4.15: 4 residues within 4Å: Chain H: H.54, K.79, H.118, K.144 Ligand excluded by PLIP PO4.17: 6 residues within 4Å: Chain K: R.85, M.88, R.120, R.409 Ligands: PO4.18, PO4.19 Ligand excluded by PLIP PO4.18: 3 residues within 4Å: Chain K: R.120, K.147 Ligands: PO4.17 Ligand excluded by PLIP PO4.19: 5 residues within 4Å: Chain K: K.81, R.85, R.120, R.121 Ligands: PO4.17 Ligand excluded by PLIP PO4.20: 4 residues within 4Å: Chain K: H.54, K.79, H.118, K.144 Ligand excluded by PLIP PO4.22: 8 residues within 4Å: Chain M: R.85, M.88, R.120, R.409 Chain N: R.2 Ligands: OGK.21, PO4.23, PO4.24 Ligand excluded by PLIP PO4.23: 4 residues within 4Å: Chain M: R.120, K.147 Chain N: R.2 Ligands: PO4.22 Ligand excluded by PLIP PO4.24: 7 residues within 4Å: Chain M: K.81, R.85, R.120, R.121, R.440, K.492 Ligands: PO4.22 Ligand excluded by PLIP PO4.25: 4 residues within 4Å: Chain M: H.54, K.79, H.118, K.144 Ligand excluded by PLIP PO4.27: 8 residues within 4Å: Chain P: R.85, M.88, R.120, R.409 Chain Q: R.2 Ligands: OGK.26, PO4.28, PO4.29 Ligand excluded by PLIP PO4.28: 4 residues within 4Å: Chain P: R.120, K.147 Chain Q: R.2 Ligands: PO4.27 Ligand excluded by PLIP PO4.29: 6 residues within 4Å: Chain P: K.81, R.85, R.120, R.121, K.492 Ligands: PO4.27 Ligand excluded by PLIP PO4.30: 4 residues within 4Å: Chain P: H.54, K.79, H.118, K.144 Ligand excluded by PLIP PO4.32: 8 residues within 4Å: Chain S: R.85, M.88, R.120, R.409, R.440 Ligands: OGK.31, PO4.33, PO4.34 Ligand excluded by PLIP PO4.33: 4 residues within 4Å: Chain S: R.120, K.147 Chain T: R.2 Ligands: PO4.32 Ligand excluded by PLIP PO4.34: 7 residues within 4Å: Chain S: K.81, R.85, R.120, R.121, R.440, K.492 Ligands: PO4.32 Ligand excluded by PLIP PO4.35: 4 residues within 4Å: Chain S: H.54, K.79, H.118, K.144 Ligand excluded by PLIP PO4.37: 8 residues within 4Å: Chain V: R.85, M.88, R.120, R.409 Chain W: R.2 Ligands: OGK.36, PO4.38, PO4.39 Ligand excluded by PLIP PO4.38: 4 residues within 4Å: Chain V: R.120, K.147 Chain W: R.2 Ligands: PO4.37 Ligand excluded by PLIP PO4.39: 7 residues within 4Å: Chain V: K.81, R.85, R.120, R.121, R.440, K.492 Ligands: PO4.37 Ligand excluded by PLIP PO4.40: 4 residues within 4Å: Chain V: H.54, K.79, H.118, K.144 Ligand excluded by PLIP

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Sheard, L.B. et al., Jasmonate perception by inositol-phosphate-potentiated COI1-JAZ co-receptor. Nature (2010)

Release Date

2010-10-13

Peptides

SKP1-like protein 1A: ADGJLORU
Coronatine-insensitive protein 1: BEHKMPSV
JAZ1 incomplete degron peptide: CFINQTW

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

D
C

G
E

J
G

L
I

O
K

R
M

U
O

B
B

E
D

H
F

K
H

M
J

P
L

S
N

V
P

C
Q

F
R

I
S

N
U

Q
V

T
W

W
X

SKP1-like protein 1A

Coronatine-insensitive protein 1

JAZ1 incomplete degron peptide

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