SMTL ID : 3ogt.1

Design, Chemical synthesis, Functional characterization and Crystal structure of the sidechain analogue of 1,25-dihydroxyvitamin D3.

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.75 Å

Oligo State

monomer

Ligands

1 x FMV: (1S,3R,5Z,7E,14beta,17alpha,20S)-20-[5-(1-hydroxy-1-methylethyl)furan-2-yl]-9,10-secopregna-5,7,10-triene-1,3-diol(Non-covalent)

FMV.1: 18 residues within 4Å: Chain A: Y.26, Y.30, L.59, L.65, V.66, S.69, I.100, I.103, R.106, S.107, S.110, W.118, C.120, V.132, H.137, L.141, L.145, H.229 17 PLIP interactions: 17 interactions with chain A Hydrophobic interactions: A:Y.26, A:L.59, A:L.65, A:L.65, A:V.66, A:I.100, A:I.103, A:W.118, A:V.132, A:V.132, A:L.141, A:L.145 Hydrogen bonds: A:Y.26, A:S.69, A:R.106, A:S.110, A:H.137

2 x SO4: SULFATE ION(Non-functional Binders)

SO4.2: 4 residues within 4Å: Chain A: F.111, T.112, M.113, K.153 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:M.113 Water bridges: A:K.153, A:K.153, A:K.153 Salt bridges: A:K.153 SO4.3: 5 residues within 4Å: Chain A: Q.239, P.240, E.241, C.242, S.243 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:E.241, A:C.242, A:S.243, A:S.243

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Huet, T. et al., Design, Chemical synthesis, Functional characterization and Crystal structure of the sidechain analogue of 1,25-dihydroxyvitamin D3. To be Published

Release Date

2011-08-17

Peptides

Vitamin D3 receptor: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Vitamin D3 receptor

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