SMTL ID : 3ogu.1

DNA Polymerase beta mutant 5P20 complexed with 6bp of DNA

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.84 Å

Oligo State

monomer

Ligands

1 x DC- DA- DT- DC- DT- DG: 5'-D(*CP*AP*TP*CP*TP*G)-3'(Non-covalent)

DC-DA-DT-DC-DT-DG.1: 13 residues within 4Å: Chain A: S.229, K.230, G.231, K.232, T.233, K.234, Y.296 Ligands: DC-DA-DG-DA-DT-DG.2, DC-DA-DG-DA-DT-DG.2, DC-DA-DG-DA-DT-DG.2, DC-DA-DG-DA-DT-DG.2, DC-DA-DG-DA-DT-DG.2, DC-DA-DG-DA-DT-DG.2 Protein-ligand interaction information (PLIP) not available

1 x DC- DA- DG- DA- DT- DG: 5'-D(P*CP*AP*GP*AP*TP*G)-3'(Non-covalent)

DC-DA-DG-DA-DT-DG.2: 19 residues within 4Å: Chain A: V.103, S.104, G.105, I.106, G.107, P.108, S.109, A.110, H.135, M.236, R.254 Ligands: DC-DA-DT-DC-DT-DG.1, DC-DA-DT-DC-DT-DG.1, DC-DA-DT-DC-DT-DG.1, DC-DA-DT-DC-DT-DG.1, DC-DA-DT-DC-DT-DG.1, DC-DA-DT-DC-DT-DG.1, NA.3, NA.7 Protein-ligand interaction information (PLIP) not available

3 x NA: SODIUM ION(Non-functional Binders)

NA.3: 5 residues within 4Å: Chain A: T.101, V.103, S.104, I.106 Ligands: DC-DA-DG-DA-DT-DG.2 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:T.101, A:G.105, A:I.106 NA.5: 3 residues within 4Å: Chain A: P.151, E.154 Ligands: MES.6 No protein-ligand interaction detected (PLIP) NA.7: 1 residues within 4Å: Ligands: DC-DA-DG-DA-DT-DG.2 No protein-ligand interaction detected (PLIP)

1 x GOL: GLYCEROL(Non-functional Binders)

GOL.4: 2 residues within 4Å: Chain A: P.50, H.51 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:P.50, A:H.51 Water bridges: A:K.52

1 x MES: 2-(N-MORPHOLINO)-ETHANESULFONIC ACID(Non-covalent)

MES.6: 7 residues within 4Å: Chain A: E.154, K.244, K.248, E.249, Y.250, P.251 Ligands: NA.5 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:K.244 Water bridges: A:K.148

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Gieseking, S. et al., Human DNA polymerase beta mutations allowing efficient abasic site bypass. J.Biol.Chem. (2011)

Release Date

2010-11-24

Peptides

DNA polymerase beta: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

DNA polymerase beta