SMTL ID : 3ohg.1

Crystal structure of a protein with unknown function from DUF2233 family (BACOVA_00430) from Bacteroides ovatus at 1.80 A resolution

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.80 Å

Oligo State

monomer

Ligands

1 x CL: CHLORIDE ION(Non-functional Binders)

CL.1: 4 residues within 4Å: Chain A: P.71, A.72, R.110, V.111 Ligand excluded by PLIP

2 x SO4: SULFATE ION(Non-functional Binders)

SO4.2: 3 residues within 4Å: Chain A: D.212, S.213, R.270 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:S.213 Salt bridges: A:R.270 SO4.3: 4 residues within 4Å: Chain A: R.209, G.242, G.243, R.273 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:G.243 Water bridges: A:R.273, A:R.273 Salt bridges: A:R.209, A:R.273

17 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.4: 6 residues within 4Å: Chain A: M.2, P.3, V.12, N.18, D.19, V.20 Ligand excluded by PLIP EDO.5: 4 residues within 4Å: Chain A: Y.135, Y.143, H.153 Ligands: EDO.17 Ligand excluded by PLIP EDO.6: 4 residues within 4Å: Chain A: D.30, G.31, I.32, K.33 Ligand excluded by PLIP EDO.7: 6 residues within 4Å: Chain A: T.64, D.66, V.70, P.71, A.72, S.77 Ligand excluded by PLIP EDO.8: 3 residues within 4Å: Chain A: D.66, K.68, N.91 Ligand excluded by PLIP EDO.9: 2 residues within 4Å: Chain A: T.94, E.283 Ligand excluded by PLIP EDO.10: 3 residues within 4Å: Chain A: S.213, F.214 Ligands: EDO.12 Ligand excluded by PLIP EDO.11: 3 residues within 4Å: Chain A: A.6, R.9, Q.10 Ligand excluded by PLIP EDO.12: 5 residues within 4Å: Chain A: S.45, S.213, F.214 Ligands: EDO.10, EDO.16 Ligand excluded by PLIP EDO.13: 2 residues within 4Å: Chain A: Q.196, R.198 Ligand excluded by PLIP EDO.14: 4 residues within 4Å: Chain A: D.67, N.69, N.91, K.117 Ligand excluded by PLIP EDO.15: 2 residues within 4Å: Chain A: R.109, R.273 Ligand excluded by PLIP EDO.16: 5 residues within 4Å: Chain A: G.43, E.44, S.45, R.210 Ligands: EDO.12 Ligand excluded by PLIP EDO.17: 3 residues within 4Å: Chain A: A.152, H.153 Ligands: EDO.5 Ligand excluded by PLIP EDO.18: 2 residues within 4Å: Chain A: F.176 Ligands: EDO.19 Ligand excluded by PLIP EDO.19: 3 residues within 4Å: Chain A: F.176, E.178 Ligands: EDO.18 Ligand excluded by PLIP EDO.20: 6 residues within 4Å: Chain A: L.55, N.56, G.140, E.141, K.199, K.284 Ligand excluded by PLIP

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Das, D. et al., Structure and function of the DUF2233 domain in bacteria and in the human mannose 6-phosphate uncovering enzyme. J.Biol.Chem. (2013)

Release Date

2010-09-08

Peptides

Uncharacterized protein from DUF2233 family: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Uncharacterized protein from DUF2233 family